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Q944S3 (TLP5_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Tubby-like F-box protein 5
Short name=AtTLP5
Gene names
Name:TULP5
Ordered Locus Names:At1g43640
ORF Names:T10P12.9
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length429 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Tissue specificity

Mostly expressed in roots, flowers and siliques. Ref.1

Sequence similarities

Belongs to the TUB family.

Contains 1 F-box domain.

Sequence caution

The sequence AAD39275.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 429429Tubby-like F-box protein 5
PRO_0000272233

Regions

Domain53 – 10856F-box

Sequences

Sequence LengthMass (Da)Tools
Q944S3 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: DC1E315A4C202556

FASTA42947,845
        10         20         30         40         50         60 
MSFLSIVRDV RDTVGSFSRR SFDVRVSNGT THQRSKSHGV EAHIEDLIVI KNTRWANLPA 

        70         80         90        100        110        120 
ALLRDVMKKL DESESTWPAR KQVVACAGVC KTWRLMCKDI VKSPEFSGKL TFPVSLKQPG 

       130        140        150        160        170        180 
PRDGIIQCYI KRDKSNMTYH LYLSLSPAIL VESGKFLLSA KRSRRATYTE YVISMDADNI 

       190        200        210        220        230        240 
SRSSSTYIGK LKSNFLGTKF IVYDTAPAYN SSQILSPPNR SRSFNSKKVS PKVPSGSYNI 

       250        260        270        280        290        300 
AQVTYELNLL GTRGPRRMNC IMHSIPSLAL EPGGTVPSQP EFLQRSLDES FRSIGSSKIV 

       310        320        330        340        350        360 
NHSGDFTRPK EEEGKVRPLV LKTKPPRWLQ PLRCWCLNFK GRVTVASVKN FQLMSAATVQ 

       370        380        390        400        410        420 
PGSGSDGGAL ATRPSLSPQQ PEQSNHDKII LHFGKVGKDM FTMDYRYPLS AFQAFAISLS 


TFDTKLACE

« Hide

References

« Hide 'large scale' references
[1]"Molecular analyses of the Arabidopsis TUBBY-like protein gene family."
Lai C.-P., Lee C.-L., Chen P.-H., Wu S.-H., Yang C.-C., Shaw J.-F.
Plant Physiol. 134:1586-1597(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, NOMENCLATURE.
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY046921 mRNA. Translation: AAL03977.1.
AC007203 Genomic DNA. Translation: AAD39275.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE31979.1.
AF424565 mRNA. Translation: AAL11559.1.
AY072154 mRNA. Translation: AAL59976.1.
AY122972 mRNA. Translation: AAM67505.1.
IPIIPI00547516.
PIRF96499.
RefSeqNP_564485.1. NM_103489.2.
UniGeneAt.11339.

3D structure databases

HSSPHSSP built from PDB template 2FIM based on UniProtKB O00294.
ProteinModelPortalQ944S3.
SMRQ944S3. Positions 118-423.
ModBaseSearch...

Protein-protein interaction databases

STRING3702.AT1G43640.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G43640.1; AT1G43640.1; AT1G43640.
GeneID840948.
KEGGath:AT1G43640.

Organism-specific databases

TAIRAt1g43640.

Phylogenomic databases

eggNOGNOG265772.
HOGENOMHOG000238161.
InParanoidQ944S3.
OMAWREICKE.
PhylomeDBQ944S3.
ProtClustDBCLSN2917142.

Gene expression databases

GenevestigatorQ944S3.

Family and domain databases

Gene3D3.20.90.10. 1 hit.
InterProIPR001810. F-box_dom_cyclin-like.
IPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR018066. Tubby_C_CS.
[Graphical view]
PfamPF00646. F-box. 1 hit.
PF01167. Tub. 1 hit.
[Graphical view]
PRINTSPR01573. SUPERTUBBY.
SUPFAMSSF54518. Tubby_C. 1 hit.
PROSITEPS50181. FBOX. False negative.
PS01200. TUB_1. 1 hit.
PS01201. TUB_2. False negative.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTLP5_ARATH
AccessionPrimary (citable) accession number: Q944S3
Secondary accession number(s): Q9XIF9
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: December 1, 2001
Last modified: May 1, 2013
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents