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Protein

60S ribosomal protein L18a

Gene

RPL18A

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18a
Gene namesi
Name:RPL18A
Ordered Locus Names:Os01g0752300Imported, LOC_Os01g54870Curated
ORF Names:OsJ_03475Imported, P0046E05.38, P0435B05.19
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 1

Organism-specific databases

GrameneiQ943F3.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17817860S ribosomal protein L18aPRO_0000213937Add
BLAST

Proteomic databases

PaxDbiQ943F3.
PRIDEiQ943F3.

Expressioni

Gene expression databases

ExpressionAtlasiQ943F3. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g54870.1.

Structurei

3D structure databases

ProteinModelPortaliQ943F3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18Ae family.Curated

Phylogenomic databases

eggNOGiCOG2157.
HOGENOMiHOG000211377.
InParanoidiQ943F3.
KOiK02882.
OMAiCRRPAIK.

Family and domain databases

HAMAPiMF_00273. Ribosomal_L18Ae.
InterProiIPR028877. 50S_L18Ae/Ribosomal_L18a/L20.
IPR021138. Ribosomal_L18a/L20_eukaryotes.
IPR023573. Ribosomal_L18a/LX.
[Graphical view]
PfamiPF01775. Ribosomal_L18ae. 1 hit.
[Graphical view]
PIRSFiPIRSF002190. Ribosomal_L18a. 1 hit.

Sequencei

Sequence statusi: Complete.

Q943F3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAFRFHQYQ VVGRGLPTPT DEHPKIYRMK LWATNEVRAK SKFWYFLRKL
60 70 80 90 100
KKVKKSNGQI LAINEIFEKN PTTIKNYGIW LRYQSRTGYH NMYKEYRDTT
110 120 130 140 150
LNGAVEQMYT EMASRHRVRF PCIQIIKTAT VHFKLCKRDN TKQFHKSDIK
160 170
FPLVYRKVRP PTRKLKTTFK ASRPNLFM
Length:178
Mass (Da):21,400
Last modified:December 1, 2001 - v1
Checksum:i1A508A4670C8D93B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti19 – 191P → R in AK121755 (PubMed:12869764).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003237 Genomic DNA. Translation: BAB67920.1.
AP003249 Genomic DNA. Translation: BAB89536.1.
AP008207 Genomic DNA. Translation: BAF06178.1.
CM000138 Genomic DNA. Translation: EAZ13560.1.
AK121755 mRNA. No translation available.
RefSeqiNP_001044264.1. NM_001050799.1.
UniGeneiOs.73611.

Genome annotation databases

EnsemblPlantsiOS01T0752300-01; OS01T0752300-01; OS01G0752300.
GeneIDi4327004.
KEGGiosa:4327004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003237 Genomic DNA. Translation: BAB67920.1.
AP003249 Genomic DNA. Translation: BAB89536.1.
AP008207 Genomic DNA. Translation: BAF06178.1.
CM000138 Genomic DNA. Translation: EAZ13560.1.
AK121755 mRNA. No translation available.
RefSeqiNP_001044264.1. NM_001050799.1.
UniGeneiOs.73611.

3D structure databases

ProteinModelPortaliQ943F3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g54870.1.

Proteomic databases

PaxDbiQ943F3.
PRIDEiQ943F3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0752300-01; OS01T0752300-01; OS01G0752300.
GeneIDi4327004.
KEGGiosa:4327004.

Organism-specific databases

GrameneiQ943F3.

Phylogenomic databases

eggNOGiCOG2157.
HOGENOMiHOG000211377.
InParanoidiQ943F3.
KOiK02882.
OMAiCRRPAIK.

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Gene expression databases

ExpressionAtlasiQ943F3. baseline.

Family and domain databases

HAMAPiMF_00273. Ribosomal_L18Ae.
InterProiIPR028877. 50S_L18Ae/Ribosomal_L18a/L20.
IPR021138. Ribosomal_L18a/L20_eukaryotes.
IPR023573. Ribosomal_L18a/LX.
[Graphical view]
PfamiPF01775. Ribosomal_L18ae. 1 hit.
[Graphical view]
PIRSFiPIRSF002190. Ribosomal_L18a. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRL18A_ORYSJ
AccessioniPrimary (citable) accession number: Q943F3
Secondary accession number(s): Q0JJA0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: December 1, 2001
Last modified: July 22, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.