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Protein

60S ribosomal protein L18a

Gene

RPL18A

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-OSA-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-OSA-1799339 SRP-dependent cotranslational protein targeting to membrane
R-OSA-72689 Formation of a pool of free 40S subunits
R-OSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-OSA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-OSA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18a
Gene namesi
Name:RPL18A
Ordered Locus Names:Os01g0752300Imported, LOC_Os01g54870Curated
ORF Names:OsJ_03475Imported, P0046E05.38, P0435B05.19
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002139371 – 17860S ribosomal protein L18aAdd BLAST178

Proteomic databases

PaxDbiQ943F3

Expressioni

Gene expression databases

ExpressionAtlasiQ943F3 baseline and differential
GenevisibleiQ943F3 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g54870.1

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Ielectron microscopy8.80BS1-167[»]
ProteinModelPortaliQ943F3
SMRiQ943F3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0829 Eukaryota
COG2157 LUCA
HOGENOMiHOG000211377
InParanoidiQ943F3
KOiK02882
OMAiLRTPKCH
OrthoDBiEOG09360OP7

Family and domain databases

HAMAPiMF_00273 Ribosomal_L18Ae, 1 hit
InterProiView protein in InterPro
IPR028877 50S_L18Ae/Ribosomal_L18a/L20
IPR023573 Ribosomal_L18a//L18Ae/LX
IPR021138 Ribosomal_L18a/L20_eukaryotes
PANTHERiPTHR10052 PTHR10052, 1 hit
PfamiView protein in Pfam
PF01775 Ribosomal_L18A, 1 hit
PIRSFiPIRSF002190 Ribosomal_L18a, 1 hit

Sequencei

Sequence statusi: Complete.

Q943F3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAFRFHQYQ VVGRGLPTPT DEHPKIYRMK LWATNEVRAK SKFWYFLRKL
60 70 80 90 100
KKVKKSNGQI LAINEIFEKN PTTIKNYGIW LRYQSRTGYH NMYKEYRDTT
110 120 130 140 150
LNGAVEQMYT EMASRHRVRF PCIQIIKTAT VHFKLCKRDN TKQFHKSDIK
160 170
FPLVYRKVRP PTRKLKTTFK ASRPNLFM
Length:178
Mass (Da):21,400
Last modified:December 1, 2001 - v1
Checksum:i1A508A4670C8D93B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti19P → R in AK121755 (PubMed:12869764).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003237 Genomic DNA Translation: BAB67920.1
AP003249 Genomic DNA Translation: BAB89536.1
AP008207 Genomic DNA Translation: BAF06178.1
AP014957 Genomic DNA Translation: BAS74372.1
CM000138 Genomic DNA Translation: EAZ13560.1
AK121755 mRNA No translation available.
RefSeqiXP_015621966.1, XM_015766480.1
UniGeneiOs.73611

Genome annotation databases

EnsemblPlantsiOs01t0752300-01; Os01t0752300-01; Os01g0752300
GeneIDi4327004
GrameneiOs01t0752300-01; Os01t0752300-01; Os01g0752300
KEGGiosa:4327004

Similar proteinsi

Entry informationi

Entry nameiRL18A_ORYSJ
AccessioniPrimary (citable) accession number: Q943F3
Secondary accession number(s): A0A0P0V8B3, Q0JJA0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: December 1, 2001
Last modified: February 28, 2018
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome