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Q943E7 (HS16C_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
16.9 kDa class I heat shock protein 3
Alternative name(s):
16.9 kDa heat shock protein 3
Short name=OsHsp16.9C
Gene names
Name:HSP16.9C
Ordered Locus Names:Os01g0136000, LOC_Os01g04360
ORF Names:P0443D08.3, OsJ_00278
OrganismOryza sativa subsp. japonica (Rice)
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length149 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subunit structure

May form oligomeric structures.

Subcellular location

Cytoplasm Potential.

Induction

By heat shock. Ref.6

Sequence similarities

Belongs to the small heat shock protein (HSP20) family.

Ontologies

Keywords
   Biological processStress response
   Cellular componentCytoplasm
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14914916.9 kDa class I heat shock protein 3
PRO_0000233693

Experimental info

Sequence conflict241F → L in AAB39856. Ref.1
Sequence conflict1381K → N in AAB39856. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q943E7 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 5CBA401C8051924B

FASTA14916,904
        10         20         30         40         50         60 
MSLVRRSNVF DPFADFWDPF DGVFRSLVPA TSDRDTAAFA NARVDWKETP ESHVFKADLP 

        70         80         90        100        110        120 
GVKKEEVKVE VEEGNVLVIS GQRSKEKEDK NDKWHRVERS SGQFMRRFRL PENAKVDQVK 

       130        140 
ASMENGVLTV TVPKAEVKKP EVKAIEISG

« Hide

References

« Hide 'large scale' references
[1]Huang C.-Y., Guan J.-C., Lin C.-Y.
Submitted (DEC-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: cv. Tainung 67.
[2]"The genome sequence and structure of rice chromosome 1."
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. expand/collapse author list , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
Nature 420:312-316(2002) [PubMed: 12447438] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed: 16100779] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[4]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed: 18089549] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[5]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[6]"Characterization of the genomic structures and selective expression profiles of nine class I small heat shock protein genes clustered on two chromosomes in rice (Oryza sativa L.)."
Guan J.-C., Jinn T.-L., Yeh C.-H., Feng S.-P., Chen Y.-M., Lin C.-Y.
Plant Mol. Biol. 56:795-809(2004) [PubMed: 15803416] [Abstract]
Cited for: INDUCTION.
[7]"Rice sHsp genes: genomic organization and expression profiling under stress and development."
Sarkar N.K., Kim Y.-K., Grover A.
BMC Genomics 10:393-393(2009) [PubMed: 19703271] [Abstract]
Cited for: GENE FAMILY.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U81385 Genomic DNA. Translation: AAB39856.1.
AP003250 Genomic DNA. Translation: BAB64125.1.
AP008207 Genomic DNA. Translation: BAF03867.1.
CM000138 Genomic DNA. Translation: EAZ10445.1.
PIRT04171.
RefSeqNP_001041953.1. NM_001048488.2.
UniGeneOs.80713.

3D structure databases

ProteinModelPortalQ943E7.
SMRQ943E7. Positions 2-149.
ModBaseSearch...

Proteomic databases

PRIDEQ943E7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4325696.
KEGGosa:4325696.

Organism-specific databases

GrameneQ943E7.

Phylogenomic databases

GeneTreeEPGT00050000000528.
OMAESIDISI.
PhylomeDBQ943E7.
ProtClustDBCLSN2691038.

Family and domain databases

InterProIPR002068. Hsp20.
IPR008978. HSP20-like_chaperone.
[Graphical view]
PfamPF00011. HSP20. 1 hit.
[Graphical view]
SUPFAMSSF49764. HSP20_chap. 1 hit.
PROSITEPS01031. HSP20. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameHS16C_ORYSJ
AccessionPrimary (citable) accession number: Q943E7
Secondary accession number(s): P93437, Q0JQW1
Entry history
Integrated into UniProtKB/Swiss-Prot: May 2, 2006
Last sequence update: December 1, 2001
Last modified: December 14, 2011
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents