Unreviewed, UniProtKB/TrEMBL Q940U4 (Q940U4_ARATH)

Names and origin

Protein names

Submitted name:
    AT5g28770/T32B20_60 EMBL AAK96592.1

Gene names

Ordered Locus Names:

At5g28770 TAIR At5g28770

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	307 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the bZIP family. RuleBase RU000470V2 Contains 1 bZIP domain. Spearmint SPM004827

Ontologies

Keywords
Cellular component	Nucleus RuleBase RU000470V2 Spearmint SPM004827
Ligand	DNA-binding RuleBase RU000470V2 Spearmint SPM004827
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	protein dimerization activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
	Q9FGX2	2	EBI-942713,EBI-942623
	Q9SI15	2	EBI-942713,EBI-942735
ATB2	P94060	2	EBI-942713,EBI-942769
F1B16.8	Q9FWS7	2	EBI-942713,EBI-942804
T12C14_120	Q9LZP8	4	EBI-942713,EBI-942845

Sequences

	Sequence		Length	Mass (Da)
	Q940U4-1 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: 11175239863775E8	FASTA	307	33,539
	10 20 30 40 50 60 MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP 70 80 90 100 110 120 PNVPVDSEEY RAFLKSKLNL ACAAVAMKRD TSGRSDNGGA NESEQASLAS SKATPMMSSA 130 140 150 160 170 180 ITSGSELSGD EEEADGETNM NPTNVKRVKR MLSNRESARR SRRRKQAHLS ELETQVSQLR 190 200 210 220 230 240 VENSKLMKGL TDVTQTFNDA SVENRVLKAN IETLRAKVKM AEETVKRLTG FNPMFHNMPQ 250 260 270 280 290 300 IVSTVSLPSE TSNSPDTTSS QVTTPEIISS GNKGKALIGC KMNRTASMRR VESLEHLQKR IRSVGDQ

References

[1]

"Arabidopsis cDNA clones." Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J. , Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

[2]

"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Meyers M.C., Banh J., Bowser L., Carninci P., Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AY052688 mRNA. Translation: AAK96592.1. AF446876 mRNA. Translation: AAL38609.1.
IPI	IPI00527734.
RefSeq	NP_851088.1.
UniGene	At.15754
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q940U4. 9 interactions.
Genome annotation databases
GeneID	832990.
GenomeReviews	Gene locus AT5G28770 in contig BA000015_GR.
NMPDR	fig|3702.1.peg.25085.
Organism-specific databases
TAIR	At5g28770.
Family and domain databases
InterPro	IPR011616. bZIP_1. IPR004827. TF_bZIP. [Graphical view]
Pfam	PF00170. bZIP_1. 1 hit. [Graphical view]
SMART	SM00338. BRLZ. 1 hit. [Graphical view]
PROSITE	PS50217. BZIP. 1 hit. PS00036. BZIP_BASIC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q940U4_ARATH

Accession

Primary (citable) accession number: Q940U4

Entry history

Integrated into UniProtKB/TrEMBL:	December 1, 2001
Last sequence update:	December 1, 2001
Last modified:	May 5, 2009
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)