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Unreviewed, UniProtKB/TrEMBL Q940J8 (Q940J8_ARATH)

Last modified May 5, 2009. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    Putative pectinacetylesterase protein EMBL AAK96722.1
Gene names
Name: At4g19410/T5K18.190 EMBL AAK96722.1
Ordered Locus Names: At4g19410 TAIR At4g19410
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonscore eudicotyledonsrosidseurosids IIBrassicalesBrassicaceaeArabidopsis

Protein attributes

Sequence length391 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentmembrane

Inferred from direct assay. Source: TAIR

plant-type cell wall

Inferred from direct assay. Source: TAIR

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q940J8-1 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 41E52AD064844FF4

FASTA39142,125
        10         20         30         40         50         60 
MGRLKQCWSS LLVLAVLVIG TGAVPITYLQ SAVAKGAVCL DGSAPAYHFD KGFGSGVNNW 

        70         80         90        100        110        120 
IVHMEGGGWC TDVASCNERK GTMKGSSKFM NKDFGFSGIL GGKQSTNPDF YNWNRIKVRY 

       130        140        150        160        170        180 
CDGSSFTGNV EAVNPANKLF FRGARVWRAV VDDLMAKGMK NAQNAILSGC SAGALAAILH 

       190        200        210        220        230        240 
CDTFRAILPR TASVKCVSDA GYFIHGKDIT GGSYIQSYYS KVVALHGSAK SLPVSCTSKM 

       250        260        270        280        290        300 
KPELCFFPQY VVPSMRTPLF VINAAFDSWQ IKNVLAPTAV DKGKEWKNCK LDLKKCSAAQ 

       310        320        330        340        350        360 
LKTVQGFRDQ MMRALSPVHS TPSRGLFLDS CHAHCQGGSA ASWSGDKGPQ VANTRIAKAV 

       370        380        390 
GNWFYGRSAF QKIDCPSPTC NPTCPAISTE D 

« Hide

References

[1]Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C. expand/collapse author list , Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. expand/collapse author list , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Full-length messenger RNA sequences greatly improve genome annotation."
Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed: 12093376] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Features of Arabidopsis genes and genome discovered using full-length cDNAs."
Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
Plant Mol. Biol. 60:71-87(2006)
Cited for: NUCLEOTIDE SEQUENCE.
[5]Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]Lam B., Southwick A., Karlin-Neumann G., Nguyen M., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C. expand/collapse author list , Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.
Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

AY054531 mRNA. Translation: AAK96722.1.
AY064626 mRNA. Translation: AAL47339.1.
AY087371 mRNA. Translation: AAM64921.1.
AK228936 mRNA. Translation: BAF00825.1.
IPIIPI00521088.
RefSeqNP_567585.1.
UniGeneAt.22429

3D structure databases

ModBaseSearch...

Proteomic databases

PRIDEQ940J8.

Genome annotation databases

GeneID827682.
KEGGath:AT4G19410.
NMPDRfig|3702.1.peg.19761.

Organism-specific databases

TAIRAt4g19410.

Phylogenomic databases

OMAQ940J8. KEWKNCK.

Family and domain databases

InterProIPR004963. Pec_acetylest.
[Graphical view]
PANTHERPTHR21562:SF1. Pec_acetylest. 1 hit.
PfamPF03283. PAE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ940J8_ARATH
AccessionPrimary (citable) accession number: Q940J8
Entry history
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: May 5, 2009
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information