ID ELP3_ARATH Reviewed; 565 AA. AC Q93ZR1; Q9FK40; DT 04-APR-2006, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2001, sequence version 1. DT 24-JAN-2024, entry version 154. DE RecName: Full=Elongator complex protein 3 {ECO:0000303|PubMed:20398216}; DE Short=AtELP3 {ECO:0000303|PubMed:20398216}; DE EC=2.3.1.- {ECO:0000250|UniProtKB:D5VRB9}; DE AltName: Full=Elongator component 3 {ECO:0000303|PubMed:20398216}; DE AltName: Full=Protein ELONGATA 3 {ECO:0000303|PubMed:15894610}; DE AltName: Full=Protein ENHANCER-OF-ASYMMETRIC-LEAVES-TWO1 {ECO:0000303|PubMed:21700721}; DE AltName: Full=tRNA uridine(34) acetyltransferase {ECO:0000305}; GN Name=HAG3 {ECO:0000303|PubMed:12466527}; GN Synonyms=EAST1 {ECO:0000303|PubMed:21700721}, ELO3 GN {ECO:0000303|PubMed:15894610}, ELP3 {ECO:0000303|PubMed:20398216}; GN OrderedLocusNames=At5g50320 {ECO:0000312|Araport:AT5G50320}; GN ORFNames=MXI22.3 {ECO:0000312|EMBL:BAB09451.1}; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], MUTAGENESIS OF ASP-331, DISRUPTION PHENOTYPE, RP AND TISSUE SPECIFICITY. RC STRAIN=cv. Landsberg erecta; TISSUE=Seedling; RX PubMed=15894610; DOI=10.1073/pnas.0502600102; RA Nelissen H., Fleury D., Bruno L., Robles P., de Veylder L., Traas J., RA Micol J., Van Montagu M., Inze D., Van Lijsebettens M.; RT "The elongata mutants identify a functional Elongator complex in plants RT with a role in cell proliferation during organ growth."; RL Proc. Natl. Acad. Sci. U.S.A. 102:7754-7759(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=9734815; DOI=10.1093/dnares/5.3.203; RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence RT features of the regions of 1,367,185 bp covered by 19 physically assigned RT P1 and TAC clones."; RL DNA Res. 5:203-216(1998). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RX PubMed=27862469; DOI=10.1111/tpj.13415; RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S., RA Town C.D.; RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference RT genome."; RL Plant J. 89:789-804(2017). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., RA Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [5] RP NOMENCLATURE. RX PubMed=12466527; DOI=10.1093/nar/gkf660; RA Pandey R., Mueller A., Napoli C.A., Selinger D.A., Pikaard C.S., RA Richards E.J., Bender J., Mount D.W., Jorgensen R.A.; RT "Analysis of histone acetyltransferase and histone deacetylase families of RT Arabidopsis thaliana suggests functional diversification of chromatin RT modification among multicellular eukaryotes."; RL Nucleic Acids Res. 30:5036-5055(2002). RN [6] RP FUNCTION, AND DISRUPTION PHENOTYPE. RX PubMed=20398216; DOI=10.1111/j.1365-2958.2010.07163.x; RA Mehlgarten C., Jablonowski D., Wrackmeyer U., Tschitschmann S., RA Sondermann D., Jaeger G., Gong Z., Bystroem A.S., Schaffrath R., RA Breunig K.D.; RT "Elongator function in tRNA wobble uridine modification is conserved RT between yeast and plants."; RL Mol. Microbiol. 76:1082-1094(2010). RN [7] RP FUNCTION, IDENTIFICATION IN THE ELONGATOR COMPLEX, SUBCELLULAR LOCATION, RP TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE. RX PubMed=20080602; DOI=10.1073/pnas.0913559107; RA Nelissen H., De Groeve S., Fleury D., Neyt P., Bruno L., Bitonti M.B., RA Vandenbussche F., Van der Straeten D., Yamaguchi T., Tsukaya H., RA Witters E., De Jaeger G., Houben A., Van Lijsebettens M.; RT "Plant Elongator regulates auxin-related genes during RNA polymerase II RT transcription elongation."; RL Proc. Natl. Acad. Sci. U.S.A. 107:1678-1683(2010). RN [8] RP INTERACTION WITH IYO. RX PubMed=21620701; DOI=10.1016/j.cub.2011.04.041; RA Sanmartin M., Sauer M., Munoz A., Zouhar J., Ordonez A., van de Ven W.T., RA Caro E., de la Paz Sanchez M., Raikhel N.V., Gutierrez C., RA Sanchez-Serrano J.J., Rojo E.; RT "A molecular switch for initiating cell differentiation in Arabidopsis."; RL Curr. Biol. 21:999-1008(2011). RN [9] RP FUNCTION, MUTAGENESIS OF ARG-200, AND DISRUPTION PHENOTYPE. RX PubMed=21700721; DOI=10.1093/pcp/pcr083; RA Kojima S., Iwasaki M., Takahashi H., Imai T., Matsumura Y., Fleury D., RA Van Lijsebettens M., Machida Y., Machida C.; RT "Asymmetric leaves2 and Elongator, a histone acetyltransferase complex, RT mediate the establishment of polarity in leaves of Arabidopsis thaliana."; RL Plant Cell Physiol. 52:1259-1273(2011). RN [10] RP SUBCELLULAR LOCATION. RX PubMed=22404109; DOI=10.1111/j.1365-313x.2012.04984.x; RA Tran H.T., Nimick M., Uhrig R.G., Templeton G., Morrice N., Gourlay R., RA DeLong A., Moorhead G.B.; RT "Arabidopsis thaliana histone deacetylase 14 (HDA14) is an alpha-tubulin RT deacetylase that associates with PP2A and enriches in the microtubule RT fraction with the putative histone acetyltransferase ELP3."; RL Plant J. 71:263-272(2012). RN [11] RP SUBCELLULAR LOCATION. RX PubMed=22026817; DOI=10.1111/j.1365-313x.2011.04831.x; RA Xu D., Huang W., Li Y., Wang H., Huang H., Cui X.; RT "Elongator complex is critical for cell cycle progression and leaf RT patterning in Arabidopsis."; RL Plant J. 69:792-808(2012). RN [12] RP FUNCTION, MUTAGENESIS OF GLU-423, AND TISSUE SPECIFICITY. RX PubMed=23969312; DOI=10.1016/j.ydbio.2013.08.008; RA Skylar A., Matsuwaka S., Wu X.; RT "ELONGATA3 is required for shoot meristem cell cycle progression in RT Arabidopsis thaliana seedlings."; RL Dev. Biol. 382:436-445(2013). RN [13] RP FUNCTION. RX PubMed=25907565; DOI=10.1093/pcp/pcv054; RA Fina J.P., Casati P.; RT "HAG3, a histone acetyltransferase, affects UV-B responses by negatively RT regulating the expression of DNA repair enzymes and sunscreen content in RT Arabidopsis thaliana."; RL Plant Cell Physiol. 56:1388-1400(2015). CC -!- FUNCTION: Catalytic tRNA acetyltransferase subunit of the elongator CC complex which is required for multiple tRNA modifications, including CC mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5- CC methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl CC uridine) (PubMed:20398216). In the elongator complex, acts as a tRNA CC uridine(34) acetyltransferase by mediating formation of CC carboxymethyluridine in the wobble base at position 34 in tRNAs (By CC similarity). Promotes organ development by modulating cell division CC rate (PubMed:20080602). Required for auxin distribution or signaling CC (PubMed:20080602). Required for meristem cell cycle activation at the CC time of germination (PubMed:23969312). Mediates the establishment of CC leaf polarity independently of AS2 and the ta-siRNA-related pathway CC (PubMed:21700721). Indirectly involved in negatively regulating the CC expression of genes that participate in UV-B responses, such as DNA CC repair enzymes and enzymes that participate in sunscreen pigment CC biosynthesis (PubMed:25907565). {ECO:0000250|UniProtKB:D5VRB9, CC ECO:0000269|PubMed:20080602, ECO:0000269|PubMed:20398216, CC ECO:0000269|PubMed:21700721, ECO:0000269|PubMed:23969312, CC ECO:0000269|PubMed:25907565}. CC -!- CATALYTIC ACTIVITY: CC Reaction=acetyl-CoA + H2O + S-adenosyl-L-methionine + uridine(34) in CC tRNA = 5'-deoxyadenosine + 5-(carboxymethyl)uridine(34) in tRNA + CoA CC + 2 H(+) + L-methionine; Xref=Rhea:RHEA:61020, Rhea:RHEA-COMP:10407, CC Rhea:RHEA-COMP:11727, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, CC ChEBI:CHEBI:17319, ChEBI:CHEBI:57287, ChEBI:CHEBI:57288, CC ChEBI:CHEBI:57844, ChEBI:CHEBI:59789, ChEBI:CHEBI:65315, CC ChEBI:CHEBI:74882; Evidence={ECO:0000250|UniProtKB:D5VRB9}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:61021; CC Evidence={ECO:0000250|UniProtKB:D5VRB9}; CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000250|UniProtKB:Q02908}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000250|UniProtKB:Q02908}; CC -!- PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA CC biosynthesis. {ECO:0000250|UniProtKB:Q9H9T3}. CC -!- SUBUNIT: Component of the elongator complex which consists of CC ELP1/ELO2, ELP2, ELP3/ELO3, ELP4/ELO1, ELP5, and ELP6 CC (PubMed:20080602). Interacts with IYO (PubMed:21620701). CC {ECO:0000269|PubMed:20080602, ECO:0000269|PubMed:21620701}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:20080602, CC ECO:0000269|PubMed:22026817, ECO:0000269|PubMed:22404109}. Cytoplasm CC {ECO:0000269|PubMed:22404109}. Note=Localized in euchromatin during CC interphase. {ECO:0000269|PubMed:20080602}. CC -!- TISSUE SPECIFICITY: Expressed in meristematic tissues of in roots, CC leaves, seedlings, cotyledons, floral buds and shoot apices CC (PubMed:15894610, PubMed:20080602, PubMed:23969312). Expressed in the CC shoot meristem and the emerging leaves immediately after germination CC (PubMed:23969312). In the root, expressed in the transition zone and CC the upper meristematic zone (PubMed:23969312). CC {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:20080602, CC ECO:0000269|PubMed:23969312}. CC -!- DISRUPTION PHENOTYPE: Slow growing rate associated with pale-green and CC downwardly curled narrow leaves and reduced root growth that results CC from a decreased cell division rate and a reduced apical dominance. CC Defect in tRNA wobble uridine modification. Filamentous leaves with CC abaxialized epidermis in AS2 defective plants. CC {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:20080602, CC ECO:0000269|PubMed:20398216, ECO:0000269|PubMed:21700721}. CC -!- SIMILARITY: Belongs to the ELP3 family. {ECO:0000305}. CC -!- CAUTION: The elongator complex was originally thought to play a role in CC transcription elongation. However, it is no longer thought to play a CC direct role in this process and its primary function is thought to be CC in tRNA modification. {ECO:0000250|UniProtKB:Q9H9T3}. CC -!- SEQUENCE CAUTION: CC Sequence=AAL06951.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AJ964958; CAI79647.1; -; mRNA. DR EMBL; AB012248; BAB09451.1; -; Genomic_DNA. DR EMBL; CP002688; AED95925.1; -; Genomic_DNA. DR EMBL; AY054293; AAL06951.1; ALT_INIT; mRNA. DR EMBL; AY056323; AAL07172.1; -; mRNA. DR EMBL; AY133528; AAM91358.1; -; mRNA. DR RefSeq; NP_568725.1; NM_124412.3. DR AlphaFoldDB; Q93ZR1; -. DR SMR; Q93ZR1; -. DR BioGRID; 20344; 3. DR IntAct; Q93ZR1; 3. DR STRING; 3702.Q93ZR1; -. DR iPTMnet; Q93ZR1; -. DR PaxDb; 3702-AT5G50320-1; -. DR ProteomicsDB; 221890; -. DR EnsemblPlants; AT5G50320.1; AT5G50320.1; AT5G50320. DR GeneID; 835098; -. DR Gramene; AT5G50320.1; AT5G50320.1; AT5G50320. DR KEGG; ath:AT5G50320; -. DR Araport; AT5G50320; -. DR TAIR; AT5G50320; ELO3. DR eggNOG; KOG2535; Eukaryota. DR HOGENOM; CLU_025983_2_1_1; -. DR InParanoid; Q93ZR1; -. DR OMA; TFETRPD; -. DR OrthoDB; 46095at2759; -. DR PhylomeDB; Q93ZR1; -. DR BRENDA; 2.3.1.48; 399. DR UniPathway; UPA00988; -. DR PRO; PR:Q93ZR1; -. DR Proteomes; UP000006548; Chromosome 5. DR ExpressionAtlas; Q93ZR1; baseline and differential. DR GO; GO:0005829; C:cytosol; IDA:TAIR. DR GO; GO:0033588; C:elongator holoenzyme complex; IDA:UniProtKB. DR GO; GO:0000791; C:euchromatin; IDA:UniProtKB. DR GO; GO:0005634; C:nucleus; IDA:TAIR. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0106261; F:tRNA uridine(34) acetyltransferase activity; IEA:RHEA. DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IMP:TAIR. DR GO; GO:0009294; P:DNA-mediated transformation; IMP:TAIR. DR GO; GO:0035265; P:organ growth; IMP:TAIR. DR GO; GO:0010928; P:regulation of auxin mediated signaling pathway; IMP:UniProtKB. DR GO; GO:2000025; P:regulation of leaf formation; IMP:UniProtKB. DR GO; GO:0090708; P:specification of plant organ axis polarity; IMP:UniProtKB. DR GO; GO:0002098; P:tRNA wobble uridine modification; IMP:UniProtKB. DR CDD; cd01335; Radical_SAM; 1. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR039661; ELP3. DR InterPro; IPR034687; ELP3-like. DR InterPro; IPR006638; Elp3/MiaA/NifB-like_rSAM. DR InterPro; IPR000182; GNAT_dom. DR InterPro; IPR032432; Radical_SAM_C. DR InterPro; IPR007197; rSAM. DR NCBIfam; TIGR01211; ELP3; 1. DR PANTHER; PTHR11135:SF0; ELONGATOR COMPLEX PROTEIN 3; 1. DR PANTHER; PTHR11135; HISTONE ACETYLTRANSFERASE-RELATED; 1. DR Pfam; PF00583; Acetyltransf_1; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF16199; Radical_SAM_C; 1. DR PIRSF; PIRSF005669; Hist_AcTrfase_ELP3; 1. DR SFLD; SFLDF00344; ELP3-like; 1. DR SFLD; SFLDS00029; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. DR SUPFAM; SSF55729; Acyl-CoA N-acyltransferases (Nat); 1. DR SUPFAM; SSF102114; Radical SAM enzymes; 1. DR PROSITE; PS51186; GNAT; 1. DR PROSITE; PS51918; RADICAL_SAM; 1. DR Genevisible; Q93ZR1; AT. PE 1: Evidence at protein level; KW 4Fe-4S; Acyltransferase; Auxin signaling pathway; Cytoplasm; Iron; KW Iron-sulfur; Metal-binding; Nucleus; Reference proteome; RNA-binding; KW S-adenosyl-L-methionine; Transferase; tRNA processing; tRNA-binding. FT CHAIN 1..565 FT /note="Elongator complex protein 3" FT /id="PRO_0000232128" FT DOMAIN 100..390 FT /note="Radical SAM core" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01266" FT DOMAIN 414..565 FT /note="N-acetyltransferase" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00532" FT REGION 1..27 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT BINDING 117 FT /ligand="[4Fe-4S] cluster" FT /ligand_id="ChEBI:CHEBI:49883" FT /ligand_note="4Fe-4S-S-AdoMet" FT /evidence="ECO:0000250|UniProtKB:Q02908" FT BINDING 127 FT /ligand="[4Fe-4S] cluster" FT /ligand_id="ChEBI:CHEBI:49883" FT /ligand_note="4Fe-4S-S-AdoMet" FT /evidence="ECO:0000250|UniProtKB:Q02908" FT BINDING 130 FT /ligand="[4Fe-4S] cluster" FT /ligand_id="ChEBI:CHEBI:49883" FT /ligand_note="4Fe-4S-S-AdoMet" FT /evidence="ECO:0000250|UniProtKB:Q02908" FT BINDING 182 FT /ligand="acetyl-CoA" FT /ligand_id="ChEBI:CHEBI:57288" FT /evidence="ECO:0000250|UniProtKB:A0A1C7D1B7" FT BINDING 492..495 FT /ligand="acetyl-CoA" FT /ligand_id="ChEBI:CHEBI:57288" FT /evidence="ECO:0000250|UniProtKB:A0A1C7D1B7" FT BINDING 515..517 FT /ligand="acetyl-CoA" FT /ligand_id="ChEBI:CHEBI:57288" FT /evidence="ECO:0000250|UniProtKB:A0A1C7D1B7" FT BINDING 548 FT /ligand="acetyl-CoA" FT /ligand_id="ChEBI:CHEBI:57288" FT /evidence="ECO:0000250|UniProtKB:A0A1C7D1B7" FT MUTAGEN 200 FT /note="R->W: In east1-1; slow growth associated with FT pale-green and downwardly curled leaves." FT /evidence="ECO:0000269|PubMed:21700721" FT MUTAGEN 331 FT /note="D->N: In elo3-1; reduced cell proliferation." FT /evidence="ECO:0000269|PubMed:15894610" FT MUTAGEN 423 FT /note="E->K: In elo3-14; reduced tissue proliferation in FT the meristem." FT /evidence="ECO:0000269|PubMed:23969312" SQ SEQUENCE 565 AA; 63694 MW; 8F993E4D41CF4B05 CRC64; MATAVVMNGE LKKQPRPGKG GYQGRGLTEE EARVRAISEI VSTMIERSHR NENVDLNAIK TAACRKYGLA RAPKLVEMIA ALPDSERETL LPKLRAKPVR TASGIAVVAV MSKPHRCPHI ATTGNICVYC PGGPDSDFEY STQSYTGYEP TSMRAIRARY NPYVQARSRI DQLKRLGHSV DKVEFILMGG TFMSLPAEYR DFFIRNLHDA LSGHTSANVE EAVAYSEHSA TKCIGMTIET RPDYCLGPHL RQMLIYGCTR LEIGVQSTYE DVARDTNRGH TVAAVADCFC LAKDAGFKVV AHMMPDLPNV GVERDMESFK EFFESPSFRA DGLKIYPTLV IRGTGLYELW KTGRYRNYPP EQLVDIVARI LSMVPPWTRV YRVQRDIPMP LVTSGVEKGN LRELALARMD DLGLKCRDVR TREAGIQDIH HKIKPEQVEL VRRDYTANEG WETFLSYEDT RQDILVGLLR LRKCGKNVTC PELMGKCSVV RELHVYGTAV PVHGRDADKL QHQGYGTLLM EEAERIARRE HRSNKIGVIS GVGTRHYYRK LGYELEGPYM VKHLL //