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Protein

Tryptophan aminotransferase-related protein 4

Gene

TAR4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probable aminotransferase.By similarity

Cofactori

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei124Pyridoxal phosphateBy similarity1
Binding sitei239Pyridoxal phosphateBy similarity1
Binding sitei259Pyridoxal phosphateBy similarity1
Binding sitei293Pyridoxal phosphateBy similarity1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Ligandi

Pyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
Tryptophan aminotransferase-related protein 4 (EC:2.6.1.-)
Gene namesi
Name:TAR4
Ordered Locus Names:At1g34060
ORF Names:F12G12.12, F12G12.150
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G34060.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 26HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004116771 – 463Tryptophan aminotransferase-related protein 4Add BLAST463

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei285N6-(pyridoxal phosphate)lysineSequence analysis1

Proteomic databases

PaxDbiQ93Z38.

Expressioni

Gene expression databases

GenevisibleiQ93Z38. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G34060.1.

Structurei

3D structure databases

ProteinModelPortaliQ93Z38.
SMRiQ93Z38.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni163 – 164Pyridoxal phosphate bindingBy similarity2
Regioni259 – 262Pyridoxal phosphate bindingBy similarity4
Regioni282 – 285Pyridoxal phosphate bindingBy similarity4

Sequence similaritiesi

Belongs to the alliinase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IIDZ. Eukaryota.
ENOG410XS9Z. LUCA.
HOGENOMiHOG000237549.
InParanoidiQ93Z38.
OMAiVMSSRWR.
OrthoDBiEOG093607DE.
PhylomeDBiQ93Z38.

Family and domain databases

Gene3Di2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
PF04863. EGF_alliinase. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

Q93Z38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMQKKLLLIV SIILNLVFTI HILYYSSTTW NPTWTNRAAA EAETVASFSC
60 70 80 90 100
SGHGRAFVDG LGVLDGQKPP CECNNCYIGK DCSVLLKDCP VDANSGDPLF
110 120 130 140 150
LEPFWMRQAE RSAILVSGWH RMSYIYEDGT YVSRELEKVI RKLHSVVGNA
160 170 180 190 200
VTDNRFVIFG SGTTQLLAAA VHALSLTNSS VSSPARLLTS IPYYAMYKDQ
210 220 230 240 250
AEFFDSAHLK FEGNASAWKQ SGRNDNITQV IEVVTSPNNP DGKLKRAVLD
260 270 280 290 300
GPNVKTLHDY AYYWPHFSPI THPVDEDLSL FSLSKTTGHA GSRFGWGLVK
310 320 330 340 350
DKAIYEKMDR FIRLTSMGVS KETQLHVLQL LKVVVGDGGN EIFSFGYGTV
360 370 380 390 400
KKRWETLNKI FSMSTRFSLQ TIKPEYCNYF KKVREFTPSY AWVKCERPED
410 420 430 440 450
TNCYEIFRAA KITGRNGNVF GSEERFVRLS LIRSQDDFDQ LIAMLKKLVY
460
HEEDVPSENF MYI
Length:463
Mass (Da):52,430
Last modified:July 27, 2011 - v2
Checksum:iAB0FD34E580AD0BA
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti100F → S in AAL25576 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015446 Genomic DNA. Translation: AAG12531.1.
CP002684 Genomic DNA. Translation: AEE31667.1.
AY058162 mRNA. Translation: AAL25576.1.
PIRiE86464.
RefSeqiNP_564435.1. NM_103128.4.
UniGeneiAt.26614.

Genome annotation databases

EnsemblPlantsiAT1G34060.1; AT1G34060.1; AT1G34060.
GeneIDi840303.
GrameneiAT1G34060.1; AT1G34060.1; AT1G34060.
KEGGiath:AT1G34060.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015446 Genomic DNA. Translation: AAG12531.1.
CP002684 Genomic DNA. Translation: AEE31667.1.
AY058162 mRNA. Translation: AAL25576.1.
PIRiE86464.
RefSeqiNP_564435.1. NM_103128.4.
UniGeneiAt.26614.

3D structure databases

ProteinModelPortaliQ93Z38.
SMRiQ93Z38.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G34060.1.

Proteomic databases

PaxDbiQ93Z38.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G34060.1; AT1G34060.1; AT1G34060.
GeneIDi840303.
GrameneiAT1G34060.1; AT1G34060.1; AT1G34060.
KEGGiath:AT1G34060.

Organism-specific databases

TAIRiAT1G34060.

Phylogenomic databases

eggNOGiENOG410IIDZ. Eukaryota.
ENOG410XS9Z. LUCA.
HOGENOMiHOG000237549.
InParanoidiQ93Z38.
OMAiVMSSRWR.
OrthoDBiEOG093607DE.
PhylomeDBiQ93Z38.

Miscellaneous databases

PROiQ93Z38.

Gene expression databases

GenevisibleiQ93Z38. AT.

Family and domain databases

Gene3Di2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
PF04863. EGF_alliinase. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTAR4_ARATH
AccessioniPrimary (citable) accession number: Q93Z38
Secondary accession number(s): Q9FX14
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 30, 2016
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.