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Q93Z38 (TAR4_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Tryptophan aminotransferase-related protein 4

EC=2.6.1.-
Gene names
Name:TAR4
Ordered Locus Names:At1g34060
ORF Names:F12G12.12, F12G12.150
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length463 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Probable aminotransferase By similarity.

Cofactor

Pyridoxal phosphate By similarity.

Subcellular location

Membrane; Single-pass membrane protein Potential.

Sequence similarities

Belongs to the alliinase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 463463Tryptophan aminotransferase-related protein 4
PRO_0000411677

Regions

Transmembrane6 – 2621Helical; Potential
Region163 – 1642Pyridoxal phosphate binding By similarity
Region259 – 2624Pyridoxal phosphate binding By similarity
Region282 – 2854Pyridoxal phosphate binding By similarity

Sites

Binding site1241Pyridoxal phosphate By similarity
Binding site2391Pyridoxal phosphate By similarity
Binding site2591Pyridoxal phosphate By similarity
Binding site2931Pyridoxal phosphate By similarity

Amino acid modifications

Modified residue2851N6-(pyridoxal phosphate)lysine Potential

Experimental info

Sequence conflict1001F → S in AAL25576. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Q93Z38 [UniParc].

Last modified July 27, 2011. Version 2.
Checksum: AB0FD34E580AD0BA

FASTA46352,430
        10         20         30         40         50         60 
MMQKKLLLIV SIILNLVFTI HILYYSSTTW NPTWTNRAAA EAETVASFSC SGHGRAFVDG 

        70         80         90        100        110        120 
LGVLDGQKPP CECNNCYIGK DCSVLLKDCP VDANSGDPLF LEPFWMRQAE RSAILVSGWH 

       130        140        150        160        170        180 
RMSYIYEDGT YVSRELEKVI RKLHSVVGNA VTDNRFVIFG SGTTQLLAAA VHALSLTNSS 

       190        200        210        220        230        240 
VSSPARLLTS IPYYAMYKDQ AEFFDSAHLK FEGNASAWKQ SGRNDNITQV IEVVTSPNNP 

       250        260        270        280        290        300 
DGKLKRAVLD GPNVKTLHDY AYYWPHFSPI THPVDEDLSL FSLSKTTGHA GSRFGWGLVK 

       310        320        330        340        350        360 
DKAIYEKMDR FIRLTSMGVS KETQLHVLQL LKVVVGDGGN EIFSFGYGTV KKRWETLNKI 

       370        380        390        400        410        420 
FSMSTRFSLQ TIKPEYCNYF KKVREFTPSY AWVKCERPED TNCYEIFRAA KITGRNGNVF 

       430        440        450        460 
GSEERFVRLS LIRSQDDFDQ LIAMLKKLVY HEEDVPSENF MYI 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development."
Stepanova A.N., Robertson-Hoyt J., Yun J., Benavente L.M., Xie D.Y., Dolezal K., Schlereth A., Juergens G., Alonso J.M.
Cell 133:177-191(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
[5]"Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants."
Tao Y., Ferrer J.L., Ljung K., Pojer F., Hong F., Long J.A., Li L., Moreno J.E., Bowman M.E., Ivans L.J., Cheng Y., Lim J., Zhao Y., Ballare C.L., Sandberg G., Noel J.P., Chory J.
Cell 133:164-176(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC015446 Genomic DNA. Translation: AAG12531.1.
CP002684 Genomic DNA. Translation: AEE31667.1.
AY058162 mRNA. Translation: AAL25576.1.
PIRE86464.
RefSeqNP_564435.1. NM_103128.3.
UniGeneAt.26614.

3D structure databases

ProteinModelPortalQ93Z38.
SMRQ93Z38. Positions 33-449.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbQ93Z38.
PRIDEQ93Z38.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G34060.1; AT1G34060.1; AT1G34060.
GeneID840303.
KEGGath:AT1G34060.

Organism-specific databases

TAIRAT1G34060.

Phylogenomic databases

eggNOGNOG290378.
HOGENOMHOG000237549.
InParanoidQ9FX14.
OMAGRNDNIT.
PhylomeDBQ93Z38.

Gene expression databases

GenevestigatorQ93Z38.

Family and domain databases

Gene3D2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF04864. Alliinase_C. 1 hit.
PF04863. EGF_alliinase. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTAR4_ARATH
AccessionPrimary (citable) accession number: Q93Z38
Secondary accession number(s): Q9FX14
Entry history
Integrated into UniProtKB/Swiss-Prot: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 59 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names