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Q93Z08

- E136_ARATH

UniProt

Q93Z08 - E136_ARATH

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Protein
Glucan endo-1,3-beta-glucosidase 6
Gene
At5g58090, K21L19.12, K21L19_70
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei262 – 2621Nucleophile By similarity
Active sitei323 – 3231Proton donor By similarity

GO - Molecular functioni

  1. glucan endo-1,3-beta-D-glucosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
  2. defense response Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Plant defense

Enzyme and pathway databases

BioCyciARA:AT5G58090-MONOMER.

Protein family/group databases

CAZyiCBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Names & Taxonomyi

Protein namesi
Recommended name:
Glucan endo-1,3-beta-glucosidase 6 (EC:3.2.1.39)
Alternative name(s):
(1->3)-beta-glucan endohydrolase 6
Short name:
(1->3)-beta-glucanase 6
Beta-1,3-endoglucanase 6
Short name:
Beta-1,3-glucanase 6
Gene namesi
Ordered Locus Names:At5g58090
ORF Names:K21L19.12, K21L19_70
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G58090.

Subcellular locationi

GO - Cellular componenti

  1. anchored component of membrane Source: TAIR
  2. anchored component of plasma membrane Source: TAIR
  3. plasma membrane Source: TAIR
  4. plasmodesma Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 Reviewed prediction
Add
BLAST
Chaini22 – 455434Glucan endo-1,3-beta-glucosidase 6
PRO_0000011892Add
BLAST
Propeptidei456 – 47722Removed in mature form Reviewed prediction
PRO_0000011893Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi97 – 971N-linked (GlcNAc...) Reviewed prediction
Glycosylationi124 – 1241N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi363 ↔ 425 By similarity
Glycosylationi406 – 4061N-linked (GlcNAc...) Reviewed prediction
Glycosylationi429 – 4291N-linked (GlcNAc...) Reviewed prediction
Lipidationi455 – 4551GPI-anchor amidated glycine Reviewed prediction

Post-translational modificationi

Contains two additional disulfide bonds By similarity.

Keywords - PTMi

Disulfide bond, Glycoprotein, GPI-anchor, Lipoprotein

Proteomic databases

PaxDbiQ93Z08.
PRIDEiQ93Z08.

Expressioni

Gene expression databases

GenevestigatoriQ93Z08.

Interactioni

Protein-protein interaction databases

BioGridi21165. 1 interaction.
IntActiQ93Z08. 1 interaction.
STRINGi3702.AT5G58090.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ93Z08.
SMRiQ93Z08. Positions 22-341, 362-446.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG247729.
HOGENOMiHOG000238221.
InParanoidiQ93Z08.
OMAiDDVACGF.
PhylomeDBiQ93Z08.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012946. X8.
[Graphical view]
PfamiPF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view]
SMARTiSM00768. X8. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS00587. GLYCOSYL_HYDROL_F17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q93Z08-1 [UniParc]FASTAAdd to Basket

« Hide

MGWGSVLLLL AVALLCQRAS SIGANWGTQA SHPLPPDIVV RMLRENGIQK    50
VKLFDAEYDT LRALGKSGIE VMVGIPNEML ATLASSLKAA EKWVAKNVST 100
HISTDNVNIR YVAVGNEPFL STYNGSYLST TFPALRNIQI AIIKAGLQNQ 150
VKVTCPLNAD VYDSSTTFPS GGDFRANIRD LMITIVKFLS ENGGPFTVNI 200
YPYISLYTNP DFPVDYAFFD GNAQPLNDGG TFYYNMFDAN YDTLVHALEK 250
NGFGNMPIII GEIGWPTDGD SNANLDYAKK FNQGFMAHIS GGKGTPRRPG 300
PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPKYALN LGTTNTGALI 350
QAKGVRYLER KWCVMKPNVR LDDPQVAPAV SYACSLGDCT SLGVGTSCAN 400
LDGKQNISYA FNSYYQIQDQ LDTACKFPNI SEVTKTDPST GTCRFPIMIE 450
PYYGGAAREH GFFFPLLMVA AIAVSIF 477
Length:477
Mass (Da):52,211
Last modified:October 31, 2003 - v2
Checksum:iB8FE6F29218DF57C
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti219 – 2191F → L in AAL24251. 1 Publication
Sequence conflicti219 – 2191F → L in AAN18179. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB024029 Genomic DNA. Translation: BAB11001.1.
CP002688 Genomic DNA. Translation: AED96996.1.
AY058864 mRNA. Translation: AAL24251.1.
BT000612 mRNA. Translation: AAN18179.1.
RefSeqiNP_200617.2. NM_125194.3.
UniGeneiAt.9709.

Genome annotation databases

EnsemblPlantsiAT5G58090.1; AT5G58090.1; AT5G58090.
GeneIDi835921.
KEGGiath:AT5G58090.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB024029 Genomic DNA. Translation: BAB11001.1 .
CP002688 Genomic DNA. Translation: AED96996.1 .
AY058864 mRNA. Translation: AAL24251.1 .
BT000612 mRNA. Translation: AAN18179.1 .
RefSeqi NP_200617.2. NM_125194.3.
UniGenei At.9709.

3D structure databases

ProteinModelPortali Q93Z08.
SMRi Q93Z08. Positions 22-341, 362-446.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 21165. 1 interaction.
IntActi Q93Z08. 1 interaction.
STRINGi 3702.AT5G58090.1-P.

Protein family/group databases

CAZyi CBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Proteomic databases

PaxDbi Q93Z08.
PRIDEi Q93Z08.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G58090.1 ; AT5G58090.1 ; AT5G58090 .
GeneIDi 835921.
KEGGi ath:AT5G58090.

Organism-specific databases

TAIRi AT5G58090.

Phylogenomic databases

eggNOGi NOG247729.
HOGENOMi HOG000238221.
InParanoidi Q93Z08.
OMAi DDVACGF.
PhylomeDBi Q93Z08.

Enzyme and pathway databases

BioCyci ARA:AT5G58090-MONOMER.

Gene expression databases

Genevestigatori Q93Z08.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012946. X8.
[Graphical view ]
Pfami PF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view ]
SMARTi SM00768. X8. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
PROSITEi PS00587. GLYCOSYL_HYDROL_F17. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
    DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis."
    Borner G.H.H., Lilley K.S., Stevens T.J., Dupree P.
    Plant Physiol. 132:568-577(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
    Strain: cv. Columbia.
    Tissue: Callus.
  5. "Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
    Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
    Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiE136_ARATH
AccessioniPrimary (citable) accession number: Q93Z08
Secondary accession number(s): Q9FGT5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: October 31, 2003
Last modified: September 3, 2014
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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