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Q93Z08 (E136_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 98. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glucan endo-1,3-beta-glucosidase 6

EC=3.2.1.39
Alternative name(s):
(1->3)-beta-glucan endohydrolase 6
Short name=(1->3)-beta-glucanase 6
Beta-1,3-endoglucanase 6
Short name=Beta-1,3-glucanase 6
Gene names
Ordered Locus Names:At5g58090
ORF Names:K21L19.12, K21L19_70
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length477 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.

Subcellular location

Cell membrane; Lipid-anchorGPI-anchor.

Sequence similarities

Belongs to the glycosyl hydrolase 17 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2121 Potential
Chain22 – 455434Glucan endo-1,3-beta-glucosidase 6
PRO_0000011892
Propeptide456 – 47722Removed in mature form Potential
PRO_0000011893

Sites

Active site2621Nucleophile By similarity
Active site3231Proton donor By similarity

Amino acid modifications

Lipidation4551GPI-anchor amidated glycine Potential
Glycosylation971N-linked (GlcNAc...) Potential
Glycosylation1241N-linked (GlcNAc...) Potential
Glycosylation4061N-linked (GlcNAc...) Potential
Glycosylation4291N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict2191F → L in AAL24251. Ref.3
Sequence conflict2191F → L in AAN18179. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Q93Z08 [UniParc].

Last modified October 31, 2003. Version 2.
Checksum: B8FE6F29218DF57C

FASTA47752,211
        10         20         30         40         50         60 
MGWGSVLLLL AVALLCQRAS SIGANWGTQA SHPLPPDIVV RMLRENGIQK VKLFDAEYDT 

        70         80         90        100        110        120 
LRALGKSGIE VMVGIPNEML ATLASSLKAA EKWVAKNVST HISTDNVNIR YVAVGNEPFL 

       130        140        150        160        170        180 
STYNGSYLST TFPALRNIQI AIIKAGLQNQ VKVTCPLNAD VYDSSTTFPS GGDFRANIRD 

       190        200        210        220        230        240 
LMITIVKFLS ENGGPFTVNI YPYISLYTNP DFPVDYAFFD GNAQPLNDGG TFYYNMFDAN 

       250        260        270        280        290        300 
YDTLVHALEK NGFGNMPIII GEIGWPTDGD SNANLDYAKK FNQGFMAHIS GGKGTPRRPG 

       310        320        330        340        350        360 
PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPKYALN LGTTNTGALI QAKGVRYLER 

       370        380        390        400        410        420 
KWCVMKPNVR LDDPQVAPAV SYACSLGDCT SLGVGTSCAN LDGKQNISYA FNSYYQIQDQ 

       430        440        450        460        470 
LDTACKFPNI SEVTKTDPST GTCRFPIMIE PYYGGAAREH GFFFPLLMVA AIAVSIF 

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis."
Borner G.H.H., Lilley K.S., Stevens T.J., Dupree P.
Plant Physiol. 132:568-577(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
Strain: cv. Columbia.
Tissue: Callus.
[5]"Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB024029 Genomic DNA. Translation: BAB11001.1.
CP002688 Genomic DNA. Translation: AED96996.1.
AY058864 mRNA. Translation: AAL24251.1.
BT000612 mRNA. Translation: AAN18179.1.
RefSeqNP_200617.2. NM_125194.3.
UniGeneAt.9709.

3D structure databases

ProteinModelPortalQ93Z08.
SMRQ93Z08. Positions 22-341, 362-446.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid21165. 1 interaction.
IntActQ93Z08. 1 interaction.
STRING3702.AT5G58090.1-P.

Protein family/group databases

CAZyCBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Proteomic databases

PaxDbQ93Z08.
PRIDEQ93Z08.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G58090.1; AT5G58090.1; AT5G58090.
GeneID835921.
KEGGath:AT5G58090.

Organism-specific databases

TAIRAT5G58090.

Phylogenomic databases

eggNOGNOG247729.
HOGENOMHOG000238221.
InParanoidQ93Z08.
OMADFRTDIH.
PhylomeDBQ93Z08.
ProtClustDBCLSN2917882.

Enzyme and pathway databases

BioCycARA:AT5G58090-MONOMER.

Gene expression databases

GenevestigatorQ93Z08.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012946. X8.
[Graphical view]
PfamPF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view]
SMARTSM00768. X8. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
PROSITEPS00587. GLYCOSYL_HYDROL_F17. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE136_ARATH
AccessionPrimary (citable) accession number: Q93Z08
Secondary accession number(s): Q9FGT5
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: October 31, 2003
Last modified: April 16, 2014
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names