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Q93Z08

- E136_ARATH

UniProt

Q93Z08 - E136_ARATH

Protein

Glucan endo-1,3-beta-glucosidase 6

Gene

At5g58090

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 101 (01 Oct 2014)
      Sequence version 2 (31 Oct 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei262 – 2621NucleophileBy similarity
    Active sitei323 – 3231Proton donorBy similarity

    GO - Molecular functioni

    1. glucan endo-1,3-beta-D-glucosidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro
    2. defense response Source: UniProtKB-KW

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Plant defense

    Enzyme and pathway databases

    BioCyciARA:AT5G58090-MONOMER.

    Protein family/group databases

    CAZyiCBM43. Carbohydrate-Binding Module Family 43.
    GH17. Glycoside Hydrolase Family 17.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glucan endo-1,3-beta-glucosidase 6 (EC:3.2.1.39)
    Alternative name(s):
    (1->3)-beta-glucan endohydrolase 6
    Short name:
    (1->3)-beta-glucanase 6
    Beta-1,3-endoglucanase 6
    Short name:
    Beta-1,3-glucanase 6
    Gene namesi
    Ordered Locus Names:At5g58090
    ORF Names:K21L19.12, K21L19_70
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G58090.

    Subcellular locationi

    GO - Cellular componenti

    1. anchored component of membrane Source: TAIR
    2. anchored component of plasma membrane Source: TAIR
    3. plasma membrane Source: TAIR
    4. plasmodesma Source: TAIR

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2121Sequence AnalysisAdd
    BLAST
    Chaini22 – 455434Glucan endo-1,3-beta-glucosidase 6PRO_0000011892Add
    BLAST
    Propeptidei456 – 47722Removed in mature formSequence AnalysisPRO_0000011893Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi97 – 971N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi124 – 1241N-linked (GlcNAc...)Sequence Analysis
    Disulfide bondi363 ↔ 425By similarity
    Glycosylationi406 – 4061N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi429 – 4291N-linked (GlcNAc...)Sequence Analysis
    Lipidationi455 – 4551GPI-anchor amidated glycineSequence Analysis

    Post-translational modificationi

    Contains two additional disulfide bonds.By similarity

    Keywords - PTMi

    Disulfide bond, Glycoprotein, GPI-anchor, Lipoprotein

    Proteomic databases

    PaxDbiQ93Z08.
    PRIDEiQ93Z08.

    Expressioni

    Gene expression databases

    GenevestigatoriQ93Z08.

    Interactioni

    Protein-protein interaction databases

    BioGridi21165. 1 interaction.
    IntActiQ93Z08. 1 interaction.
    STRINGi3702.AT5G58090.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ93Z08.
    SMRiQ93Z08. Positions 22-341, 362-446.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 17 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiNOG247729.
    HOGENOMiHOG000238221.
    InParanoidiQ93Z08.
    OMAiDDVACGF.
    PhylomeDBiQ93Z08.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR000490. Glyco_hydro_17.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR012946. X8.
    [Graphical view]
    PfamiPF00332. Glyco_hydro_17. 1 hit.
    PF07983. X8. 1 hit.
    [Graphical view]
    SMARTiSM00768. X8. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.
    PROSITEiPS00587. GLYCOSYL_HYDROL_F17. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q93Z08-1 [UniParc]FASTAAdd to Basket

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    MGWGSVLLLL AVALLCQRAS SIGANWGTQA SHPLPPDIVV RMLRENGIQK    50
    VKLFDAEYDT LRALGKSGIE VMVGIPNEML ATLASSLKAA EKWVAKNVST 100
    HISTDNVNIR YVAVGNEPFL STYNGSYLST TFPALRNIQI AIIKAGLQNQ 150
    VKVTCPLNAD VYDSSTTFPS GGDFRANIRD LMITIVKFLS ENGGPFTVNI 200
    YPYISLYTNP DFPVDYAFFD GNAQPLNDGG TFYYNMFDAN YDTLVHALEK 250
    NGFGNMPIII GEIGWPTDGD SNANLDYAKK FNQGFMAHIS GGKGTPRRPG 300
    PIDAYLFSLI DEDAKSVQPG YFERHWGIFT FDGLPKYALN LGTTNTGALI 350
    QAKGVRYLER KWCVMKPNVR LDDPQVAPAV SYACSLGDCT SLGVGTSCAN 400
    LDGKQNISYA FNSYYQIQDQ LDTACKFPNI SEVTKTDPST GTCRFPIMIE 450
    PYYGGAAREH GFFFPLLMVA AIAVSIF 477
    Length:477
    Mass (Da):52,211
    Last modified:October 31, 2003 - v2
    Checksum:iB8FE6F29218DF57C
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti219 – 2191F → L in AAL24251. (PubMed:14593172)Curated
    Sequence conflicti219 – 2191F → L in AAN18179. (PubMed:14593172)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024029 Genomic DNA. Translation: BAB11001.1.
    CP002688 Genomic DNA. Translation: AED96996.1.
    AY058864 mRNA. Translation: AAL24251.1.
    BT000612 mRNA. Translation: AAN18179.1.
    RefSeqiNP_200617.2. NM_125194.3.
    UniGeneiAt.9709.

    Genome annotation databases

    EnsemblPlantsiAT5G58090.1; AT5G58090.1; AT5G58090.
    GeneIDi835921.
    KEGGiath:AT5G58090.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024029 Genomic DNA. Translation: BAB11001.1 .
    CP002688 Genomic DNA. Translation: AED96996.1 .
    AY058864 mRNA. Translation: AAL24251.1 .
    BT000612 mRNA. Translation: AAN18179.1 .
    RefSeqi NP_200617.2. NM_125194.3.
    UniGenei At.9709.

    3D structure databases

    ProteinModelPortali Q93Z08.
    SMRi Q93Z08. Positions 22-341, 362-446.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 21165. 1 interaction.
    IntActi Q93Z08. 1 interaction.
    STRINGi 3702.AT5G58090.1-P.

    Protein family/group databases

    CAZyi CBM43. Carbohydrate-Binding Module Family 43.
    GH17. Glycoside Hydrolase Family 17.

    Proteomic databases

    PaxDbi Q93Z08.
    PRIDEi Q93Z08.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G58090.1 ; AT5G58090.1 ; AT5G58090 .
    GeneIDi 835921.
    KEGGi ath:AT5G58090.

    Organism-specific databases

    TAIRi AT5G58090.

    Phylogenomic databases

    eggNOGi NOG247729.
    HOGENOMi HOG000238221.
    InParanoidi Q93Z08.
    OMAi DDVACGF.
    PhylomeDBi Q93Z08.

    Enzyme and pathway databases

    BioCyci ARA:AT5G58090-MONOMER.

    Gene expression databases

    Genevestigatori Q93Z08.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR000490. Glyco_hydro_17.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR012946. X8.
    [Graphical view ]
    Pfami PF00332. Glyco_hydro_17. 1 hit.
    PF07983. X8. 1 hit.
    [Graphical view ]
    SMARTi SM00768. X8. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    PROSITEi PS00587. GLYCOSYL_HYDROL_F17. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
      Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
      DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis."
      Borner G.H.H., Lilley K.S., Stevens T.J., Dupree P.
      Plant Physiol. 132:568-577(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].
      Strain: cv. Columbia.
      Tissue: Callus.
    5. "Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins."
      Elortza F., Nuehse T.S., Foster L.J., Stensballe A., Peck S.C., Jensen O.N.
      Mol. Cell. Proteomics 2:1261-1270(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: GPI-ANCHOR [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiE136_ARATH
    AccessioniPrimary (citable) accession number: Q93Z08
    Secondary accession number(s): Q9FGT5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 31, 2003
    Last sequence update: October 31, 2003
    Last modified: October 1, 2014
    This is version 101 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3