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Q93Z00

- TCP14_ARATH

UniProt

Q93Z00 - TCP14_ARATH

Protein

Transcription factor TCP14

Gene

TCP14

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (01 Dec 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. protein binding Source: IntAct
    3. sequence-specific DNA binding transcription factor activity Source: TAIR

    GO - Biological processi

    1. cell proliferation Source: TAIR
    2. inflorescence development Source: TAIR
    3. regulation of defense response Source: TAIR
    4. regulation of seed germination Source: TAIR
    5. regulation of transcription, DNA-templated Source: TAIR
    6. response to abscisic acid Source: TAIR
    7. response to cytokinin Source: TAIR
    8. response to gibberellin Source: TAIR
    9. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Transcription factor TCP14
    Gene namesi
    Name:TCP14
    Ordered Locus Names:At3g47620
    ORF Names:F1P2.170
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G47620.

    Subcellular locationi

    Nucleus Curated

    GO - Cellular componenti

    1. nucleus Source: TAIR

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 489489Transcription factor TCP14PRO_0000330788Add
    BLAST

    Proteomic databases

    PaxDbiQ93Z00.
    PRIDEiQ93Z00.

    Expressioni

    Gene expression databases

    GenevestigatoriQ93Z00.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    ALIS3Q9SLK22EBI-4424563,EBI-4463103
    At5g18260Q9FK452EBI-4424563,EBI-4470510
    TCP13Q9S7W53EBI-4424563,EBI-4424877

    Protein-protein interaction databases

    BioGridi9236. 117 interactions.
    IntActiQ93Z00. 147 interactions.
    STRINGi3702.AT3G47620.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ93Z00.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini117 – 17155TCPPROSITE-ProRule annotationAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi54 – 9946Gln-richAdd
    BLAST
    Compositional biasi318 – 33922Ala-richAdd
    BLAST
    Compositional biasi340 – 36425Gly-richAdd
    BLAST
    Compositional biasi441 – 45616His-richAdd
    BLAST

    Sequence similaritiesi

    Contains 1 TCP domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG311108.
    HOGENOMiHOG000241759.
    InParanoidiQ93Z00.
    OMAiTFPSINT.
    PhylomeDBiQ93Z00.

    Family and domain databases

    InterProiIPR017887. TF_TCP_subgr.
    IPR005333. Transcription_factor_TCP.
    [Graphical view]
    PfamiPF03634. TCP. 1 hit.
    [Graphical view]
    PROSITEiPS51369. TCP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q93Z00-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD    50
    DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE 100
    ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 150
    KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH 200
    FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG 250
    IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ 300
    HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG 350
    GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM 400
    NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH 450
    QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD 489
    Length:489
    Mass (Da):52,300
    Last modified:December 1, 2001 - v1
    Checksum:iAC777E2D96FC7586
    GO

    Sequence cautioni

    The sequence CAB61988.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL132955 Genomic DNA. Translation: CAB61988.1. Different initiation.
    CP002686 Genomic DNA. Translation: AEE78308.1.
    AY058874 mRNA. Translation: AAL24261.1.
    AY103304 mRNA. Translation: AAM65356.1.
    PIRiT45722.
    RefSeqiNP_190346.2. NM_114630.3.
    UniGeneiAt.21251.

    Genome annotation databases

    EnsemblPlantsiAT3G47620.1; AT3G47620.1; AT3G47620.
    GeneIDi823916.
    KEGGiath:AT3G47620.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL132955 Genomic DNA. Translation: CAB61988.1 . Different initiation.
    CP002686 Genomic DNA. Translation: AEE78308.1 .
    AY058874 mRNA. Translation: AAL24261.1 .
    AY103304 mRNA. Translation: AAM65356.1 .
    PIRi T45722.
    RefSeqi NP_190346.2. NM_114630.3.
    UniGenei At.21251.

    3D structure databases

    ProteinModelPortali Q93Z00.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 9236. 117 interactions.
    IntActi Q93Z00. 147 interactions.
    STRINGi 3702.AT3G47620.1-P.

    Proteomic databases

    PaxDbi Q93Z00.
    PRIDEi Q93Z00.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G47620.1 ; AT3G47620.1 ; AT3G47620 .
    GeneIDi 823916.
    KEGGi ath:AT3G47620.

    Organism-specific databases

    TAIRi AT3G47620.

    Phylogenomic databases

    eggNOGi NOG311108.
    HOGENOMi HOG000241759.
    InParanoidi Q93Z00.
    OMAi TFPSINT.
    PhylomeDBi Q93Z00.

    Gene expression databases

    Genevestigatori Q93Z00.

    Family and domain databases

    InterProi IPR017887. TF_TCP_subgr.
    IPR005333. Transcription_factor_TCP.
    [Graphical view ]
    Pfami PF03634. TCP. 1 hit.
    [Graphical view ]
    PROSITEi PS51369. TCP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds."
      Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.
      Plant Cell 19:458-472(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiTCP14_ARATH
    AccessioniPrimary (citable) accession number: Q93Z00
    Secondary accession number(s): Q9SN76
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 29, 2008
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3