Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q93Z00 (TCP14_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Transcription factor TCP14
Gene names
Name:TCP14
Ordered Locus Names:At3g47620
ORF Names:F1P2.170
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length489 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Nucleus Probable.

Sequence similarities

Contains 1 TCP domain.

Sequence caution

The sequence CAB61988.1 differs from that shown. Reason: Erroneous initiation.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

ALIS3Q9SLK22EBI-4424563,EBI-4463103
At5g18260Q9FK452EBI-4424563,EBI-4470510
TCP13Q9S7W53EBI-4424563,EBI-4424877

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 489489Transcription factor TCP14
PRO_0000330788

Regions

Domain117 – 17155TCP
Compositional bias54 – 9946Gln-rich
Compositional bias318 – 33922Ala-rich
Compositional bias340 – 36425Gly-rich
Compositional bias441 – 45616His-rich

Sequences

Sequence LengthMass (Da)Tools
Q93Z00 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: AC777E2D96FC7586

FASTA48952,300
        10         20         30         40         50         60 
MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS 

        70         80         90        100        110        120 
SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE ESAVVAAKKP PLKRASTKDR 

       130        140        150        160        170        180 
HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN 

       190        200        210        220        230        240 
FTSLNISLRS SGSSMSLPSH FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG 

       250        260        270        280        290        300 
RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ 

       310        320        330        340        350        360 
HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG 

       370        380        390        400        410        420 
GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM NFAAPMAFLT GQQQLATTSN 

       430        440        450        460        470        480 
HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG 


GGDEEDQQD

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds."
Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.
Plant Cell 19:458-472(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AL132955 Genomic DNA. Translation: CAB61988.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE78308.1.
AY058874 mRNA. Translation: AAL24261.1.
AY103304 mRNA. Translation: AAM65356.1.
IPIIPI00519936.
PIRT45722.
RefSeqNP_190346.2. NM_114630.3.
UniGeneAt.21251.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActQ93Z00. 147 interactions.
STRING3702.AT3G47620.1-P.

Proteomic databases

PaxDbQ93Z00.
PRIDEQ93Z00.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G47620.1; AT3G47620.1; AT3G47620.
GeneID823916.
KEGGath:AT3G47620.

Organism-specific databases

TAIRAt3g47620.

Phylogenomic databases

eggNOGNOG311108.
HOGENOMHOG000241759.
InParanoidQ93Z00.
OMAFRSAAST.
PhylomeDBQ93Z00.
ProtClustDBCLSN2917964.

Gene expression databases

GenevestigatorQ93Z00.

Family and domain databases

InterProIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamPF03634. TCP. 1 hit.
[Graphical view]
PROSITEPS51369. TCP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTCP14_ARATH
AccessionPrimary (citable) accession number: Q93Z00
Secondary accession number(s): Q9SN76
Entry history
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: December 1, 2001
Last modified: May 1, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents