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Protein

Transcription factor TCP14

Gene

TCP14

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: TAIR

GO - Biological processi

  1. cell proliferation Source: TAIR
  2. inflorescence development Source: TAIR
  3. regulation of defense response Source: TAIR
  4. regulation of seed germination Source: TAIR
  5. regulation of transcription, DNA-templated Source: TAIR
  6. response to abscisic acid Source: TAIR
  7. response to cytokinin Source: TAIR
  8. response to gibberellin Source: TAIR
  9. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor TCP14
Gene namesi
Name:TCP14
Ordered Locus Names:At3g47620
ORF Names:F1P2.170
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G47620.

Subcellular locationi

Nucleus Curated

GO - Cellular componenti

  1. nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 489489Transcription factor TCP14PRO_0000330788Add
BLAST

Proteomic databases

PaxDbiQ93Z00.
PRIDEiQ93Z00.

Expressioni

Gene expression databases

GenevestigatoriQ93Z00.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
ALIS3Q9SLK22EBI-4424563,EBI-4463103
At5g18260Q9FK452EBI-4424563,EBI-4470510
TCP13Q9S7W53EBI-4424563,EBI-4424877

Protein-protein interaction databases

BioGridi9236. 117 interactions.
IntActiQ93Z00. 149 interactions.
STRINGi3702.AT3G47620.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ93Z00.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini117 – 17155TCPPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi54 – 9946Gln-richAdd
BLAST
Compositional biasi318 – 33922Ala-richAdd
BLAST
Compositional biasi340 – 36425Gly-richAdd
BLAST
Compositional biasi441 – 45616His-richAdd
BLAST

Sequence similaritiesi

Contains 1 TCP domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG311108.
HOGENOMiHOG000241759.
InParanoidiQ93Z00.
OMAiTFPSINT.
PhylomeDBiQ93Z00.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q93Z00-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD
60 70 80 90 100
DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
110 120 130 140 150
ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH
160 170 180 190 200
KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
210 220 230 240 250
FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG
260 270 280 290 300
IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
310 320 330 340 350
HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG
360 370 380 390 400
GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
410 420 430 440 450
NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH
460 470 480
QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
Length:489
Mass (Da):52,300
Last modified:November 30, 2001 - v1
Checksum:iAC777E2D96FC7586
GO

Sequence cautioni

The sequence CAB61988.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132955 Genomic DNA. Translation: CAB61988.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE78308.1.
AY058874 mRNA. Translation: AAL24261.1.
AY103304 mRNA. Translation: AAM65356.1.
PIRiT45722.
RefSeqiNP_190346.2. NM_114630.3.
UniGeneiAt.21251.

Genome annotation databases

EnsemblPlantsiAT3G47620.1; AT3G47620.1; AT3G47620.
GeneIDi823916.
KEGGiath:AT3G47620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132955 Genomic DNA. Translation: CAB61988.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE78308.1.
AY058874 mRNA. Translation: AAL24261.1.
AY103304 mRNA. Translation: AAM65356.1.
PIRiT45722.
RefSeqiNP_190346.2. NM_114630.3.
UniGeneiAt.21251.

3D structure databases

ProteinModelPortaliQ93Z00.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9236. 117 interactions.
IntActiQ93Z00. 149 interactions.
STRINGi3702.AT3G47620.1-P.

Proteomic databases

PaxDbiQ93Z00.
PRIDEiQ93Z00.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G47620.1; AT3G47620.1; AT3G47620.
GeneIDi823916.
KEGGiath:AT3G47620.

Organism-specific databases

TAIRiAT3G47620.

Phylogenomic databases

eggNOGiNOG311108.
HOGENOMiHOG000241759.
InParanoidiQ93Z00.
OMAiTFPSINT.
PhylomeDBiQ93Z00.

Gene expression databases

GenevestigatoriQ93Z00.

Family and domain databases

InterProiIPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
[Graphical view]
PfamiPF03634. TCP. 1 hit.
[Graphical view]
PROSITEiPS51369. TCP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds."
    Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.
    Plant Cell 19:458-472(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiTCP14_ARATH
AccessioniPrimary (citable) accession number: Q93Z00
Secondary accession number(s): Q9SN76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 28, 2008
Last sequence update: November 30, 2001
Last modified: March 3, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.