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Protein

FAM10 family protein At4g22670

Gene

At4g22670

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • response to cadmium ion Source: TAIR
Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-ATH-3371453. Regulation of HSF1-mediated heat shock response.

Names & Taxonomyi

Protein namesi
Recommended name:
FAM10 family protein At4g22670
Gene namesi
Ordered Locus Names:At4g22670
ORF Names:T12H17.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G22670.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002615991 – 441FAM10 family protein At4g22670Add BLAST441

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei63PhosphoserineCombined sources1
Modified residuei89PhosphoserineCombined sources1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ93YR3.
PRIDEiQ93YR3.

PTM databases

iPTMnetiQ93YR3.

Expressioni

Gene expression databases

GenevisibleiQ93YR3. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G22670.1.

Structurei

3D structure databases

ProteinModelPortaliQ93YR3.
SMRiQ93YR3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati121 – 156TPR 1Add BLAST36
Repeati158 – 190TPR 2Add BLAST33
Repeati191 – 224TPR 3Add BLAST34
Domaini391 – 430STI1Add BLAST40

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili236 – 285Sequence analysisAdd BLAST50

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi61 – 144Glu-richAdd BLAST84
Compositional biasi290 – 383Gly/Met-richAdd BLAST94

Sequence similaritiesi

Belongs to the FAM10 family.Curated
Contains 1 STI1 domain.Curated
Contains 3 TPR repeats.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Repeat, TPR repeat

Phylogenomic databases

eggNOGiKOG1308. Eukaryota.
ENOG410XR19. LUCA.
HOGENOMiHOG000001586.
InParanoidiQ93YR3.
KOiK09560.
OMAiVQPKANK.
OrthoDBiEOG09360KQP.
PhylomeDBiQ93YR3.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR006636. STI1_HS-bd.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
[Graphical view]
SMARTiSM00727. STI1. 1 hit.
SM00028. TPR. 3 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
PROSITEiPS50005. TPR. 3 hits.
PS50293. TPR_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q93YR3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDSTKLSELK VFIDQCKSDP SLLTTPSLSF FRDYLESLGA KIPTGVHEED
60 70 80 90 100
KDTKPRSFVV EESDDDMDET EEVKPKVEEE EEEDEIVESD VELEGDTVEP
110 120 130 140 150
DNDPPQKMGD SSVEVTDENR EAAQEAKGKA MEALSEGNFD EAIEHLTRAI
160 170 180 190 200
TLNPTSAIMY GNRASVYIKL KKPNAAIRDA NAALEINPDS AKGYKSRGMA
210 220 230 240 250
RAMLGEWAEA AKDLHLASTI DYDEEISAVL KKVEPNAHKL EEHRRKYDRL
260 270 280 290 300
RKEREDKKAE RDRLRRRAEA QAAYDKAKKE EQSSSSRPSG GGFPGGMPGG
310 320 330 340 350
FPGGMPGGFP GGMGGMPGGF PGGMGGMGGM PGGFPGGMGG GMPAGMGGGM
360 370 380 390 400
PGMGGGMPAG MGGGGMPGAG GGMPGGGGMP GGMDFSKILN DPELMTAFSD
410 420 430 440
PEVMAALQDV MKNPANLAKH QANPKVAPVI AKMMGKFAGP Q
Length:441
Mass (Da):46,621
Last modified:December 1, 2001 - v1
Checksum:i3E8E7E63BBC6BA1C
GO

Sequence cautioni

The sequence CAA16552 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79222 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL021635 Genomic DNA. Translation: CAA16552.1. Sequence problems.
AL161557 Genomic DNA. Translation: CAB79222.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE84638.1.
AY059803 mRNA. Translation: AAL24285.1.
BT003349 mRNA. Translation: AAO29967.1.
AY087472 mRNA. Translation: AAM65016.1.
PIRiT04562.
RefSeqiNP_567663.1. NM_118393.3.
UniGeneiAt.19890.

Genome annotation databases

EnsemblPlantsiAT4G22670.1; AT4G22670.1; AT4G22670.
GeneIDi828363.
GrameneiAT4G22670.1; AT4G22670.1; AT4G22670.
KEGGiath:AT4G22670.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL021635 Genomic DNA. Translation: CAA16552.1. Sequence problems.
AL161557 Genomic DNA. Translation: CAB79222.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE84638.1.
AY059803 mRNA. Translation: AAL24285.1.
BT003349 mRNA. Translation: AAO29967.1.
AY087472 mRNA. Translation: AAM65016.1.
PIRiT04562.
RefSeqiNP_567663.1. NM_118393.3.
UniGeneiAt.19890.

3D structure databases

ProteinModelPortaliQ93YR3.
SMRiQ93YR3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G22670.1.

PTM databases

iPTMnetiQ93YR3.

Proteomic databases

PaxDbiQ93YR3.
PRIDEiQ93YR3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G22670.1; AT4G22670.1; AT4G22670.
GeneIDi828363.
GrameneiAT4G22670.1; AT4G22670.1; AT4G22670.
KEGGiath:AT4G22670.

Organism-specific databases

TAIRiAT4G22670.

Phylogenomic databases

eggNOGiKOG1308. Eukaryota.
ENOG410XR19. LUCA.
HOGENOMiHOG000001586.
InParanoidiQ93YR3.
KOiK09560.
OMAiVQPKANK.
OrthoDBiEOG09360KQP.
PhylomeDBiQ93YR3.

Enzyme and pathway databases

ReactomeiR-ATH-3371453. Regulation of HSF1-mediated heat shock response.

Miscellaneous databases

PROiQ93YR3.

Gene expression databases

GenevisibleiQ93YR3. AT.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR006636. STI1_HS-bd.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
[Graphical view]
SMARTiSM00727. STI1. 1 hit.
SM00028. TPR. 3 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
PROSITEiPS50005. TPR. 3 hits.
PS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF10AL_ARATH
AccessioniPrimary (citable) accession number: Q93YR3
Secondary accession number(s): O49648
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: December 1, 2001
Last modified: November 30, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.