Fructan 1-exohydrolase IIa precursor - Cichorium intybus (Chicory)

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Unreviewed, UniProtKB/TrEMBL Q93X60 (Q93X60_CICIN)

Last modified June 16, 2009. Version 36. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Fructan 1-exohydrolase IIa EMBL CAC37922.1
EC=3.2.1.80

Gene names

Name:

1-feh IIa EMBL CAC37922.1

Organism

Cichorium intybus (Chicory) EMBL CAC37922.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › campanulids › Asterales › Asteraceae › Cichorioideae › Cichorieae › Cichorium

Protein attributes

Sequence length	581 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 32 family. RuleBase RU000449V1

Ontologies

Keywords
Domain	Signal
Molecular function	Glycosidase RuleBase RU000449V1 Hydrolase
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	fructan beta-fructosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

38

Potential EMBL CAC37922.1

Chain

543

fructan 1-exohydrolase IIa EMBL CAC37922.1

PRO_5000066514

Sequences

Sequence

Length

Mass (Da)

Tools

Q93X60-1 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 8E5233D54C3B98BB
Show »

581

65,279

        10         20         30         40         50         60 
MKKSLSSFIV LCFLVIILET GRVKATSRNL NDVIMLANQQ IEQPYRTGYH FQPPSNWMND 

        70         80         90        100        110        120 
PNGPMLYQGV YHFFYQYNPY AATFGDVIIW GHAVSYDLVN WIHLDPAIYP TQEADSKSCW 

       130        140        150        160        170        180 
SGSATILPGN IPAMLYTGSD SKSRQVQDLA WPKNLSDPFL REWVKHPKNP LITPPEGVKD 

       190        200        210        220        230        240 
DCFRDPSTAW LGPDGVWRIV VGGDRDNNGM AFLYQSTDFV NWKRYDQPLS SADATGTWEC 

       250        260        270        280        290        300 
PDFYPVPLNS TNGLDTSVYG GSVRHVMKAG FEGHDWYTIG TYSPDRENFL PQNGLSLTGS 

       310        320        330        340        350        360 
TLDLRYDYGQ FYASKSFFDD AKNRRVLWAW VPETDSQADD IEKGWAGLQS FPRALWIDRN 

       370        380        390        400        410        420 
GKQLIQWPVE EIEELRQNQV NLQNKNLKPG SVLEIHGIAA SQADVTISFK LEGLKEAEVL 

       430        440        450        460        470        480 
DTTLVDPQAL CNERGASSRG ALGPFGLLAM ASKDLKEQSA IFFRVFQNQL GRYSVLMCSD 

       490        500        510        520        530        540 
LSRSTVRSNI DTTSYGAFVD IDPRSEEISL RNLIDHSIIE SFGAGGKTCI TSRIYPKFVN 

       550        560        570        580 
NEEAHLFVFN NGTQNVKISE MSAWSMKNAK FVVDQSVKSA A

References

[1]	"Defoliation induces fructan 1-exohydrolase II in Witloof chicory roots. Cloning and purification of two isoforms, fructan 1-exohydrolase IIa and fructan 1-exohydrolase IIb. Mass fingerprint of the fructan 1-exohydrolase II enzymes." Van den Ende W., Michiels A., Van Wonterghem D., Clerens S.P., De Roover J., Van Laere A.J. Plant Physiol. 126:1186-1195(2001) [PubMed: 11457968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Root EMBL CAC37922.1.
[2]	"Expression analysis of a chicory fructan 1-exohydrolase gene reveals complex regulation by cold." Michiels A., Van Laere A., Van den Ende W., Tucker M. J. Exp. Bot. 55:1325-1333(2004) [PubMed: 15133058] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases

AY323935 Genomic DNA. Translation: AAP85536.1.
AJ295033 mRNA. Translation: CAC37922.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1ST8	X-ray	2.35	A	39-581	[»]
2ADD	X-ray	2.50	A	39-581	[»]
2ADE	X-ray	2.65	A	39-581	[»]
2AEY	X-ray	3.27	A	39-581	[»]
2AEZ	X-ray	3.05	A	39-581	[»]

ModBase

Protein family/group databases

CAZy

GH32. Glycoside Hydrolase Family 32.

Family and domain databases

InterPro

IPR001362. Glyco_hydro_32.
IPR018053. Glyco_hydro_32_AS.
IPR013189. Glyco_hydro_32_C.
IPR013148. Glyco_hydro_32_N.
[Graphical view]

Pfam

PF08244. Glyco_hydro_32C. 1 hit.
PF00251. Glyco_hydro_32N. 1 hit.
[Graphical view]

SMART

SM00640. Glyco_32. 1 hit.
[Graphical view]

PROSITE

PS00609. GLYCOSYL_HYDROL_F32. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q93X60_CICIN

Accession

Primary (citable) accession number: Q93X60

Entry history

Integrated into UniProtKB/TrEMBL:	December 1, 2001
Last sequence update:	December 1, 2001
Last modified:	June 16, 2009
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information