Two-component response regulator-like APRR7 - Arabidopsis thaliana (Mouse-ear cress)

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Q93WK5 (APRR7_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 82. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Two-component response regulator-like APRR7

Alternative name(s):
Pseudo-response regulator 7

Gene names

Name:	APRR7
Ordered Locus Names:	At5g02810
ORF Names:	F9G14_120

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	727 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Ref.1 Ref.6
Subcellular location	Nucleus Ref.6.
Sequence similarities	Belongs to the ARR-like family. Contains 1 CCT domain. Contains 1 response regulatory domain.
Caution	Lacks the phospho-accepting Asp (here Glu-130), present in the receiver domain, which is one of the conserved features of two-component response regulators (ARRs) family.
Sequence caution	The sequence CAB86035.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Transcription Transcription regulation Two-component regulatory system
Cellular component	Nucleus
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	circadian rhythm Inferred from mutant phenotype PubMed 15695441. Source: TAIR intracellular signal transduction Inferred from electronic annotation. Source: GOC negative regulation of transcription, DNA-dependent Inferred from direct assay PubMed 20233950. Source: TAIR red or far-red light signaling pathway Inferred from mutant phenotype Ref.6. Source: TAIR response to temperature stimulus Inferred from genetic interaction PubMed 15767265. Source: TAIR transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	mitochondrion Inferred from direct assay PubMed 14671022. Source: TAIR nucleus Inferred from direct assay Ref.6. Source: TAIR
Molecular_function	DNA binding Inferred from physical interaction PubMed 20233950. Source: TAIR phosphorelay response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 727

727

Two-component response regulator-like APRR7

PRO_0000081439

Regions

Domain

79 – 197

119

Response regulatory

Domain

669 – 711

CCT

Compositional bias

202 – 259

Ser-rich

Compositional bias

608 – 658

Gly-rich

Sequences

Sequence

Length

Mass (Da)

Tools

Q93WK5 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 13057E6AE6E50C00
Show »

FASTA

727

79,663

        10         20         30         40         50         60 
MNANEEGEGS RYPITDRKTG ETKFDRVESR TEKHSEEEKT NGITMDVRNG SSGGLQIPLS 

        70         80         90        100        110        120 
QQTAATVCWE RFLHVRTIRV LLVENDDCTR YIVTALLRNC SYEVVEASNG IQAWKVLEDL 

       130        140        150        160        170        180 
NNHIDIVLTE VIMPYLSGIG LLCKILNHKS RRNIPVIMMS SHDSMGLVFK CLSKGAVDFL 

       190        200        210        220        230        240 
VKPIRKNELK ILWQHVWRRC QSSSGSGSES GTHQTQKSVK SKSIKKSDQD SGSSDENENG 

       250        260        270        280        290        300 
SIGLNASDGS SDGSGAQSSW TKKAVDVDDS PRAVSLWDRV DSTCAQVVHS NPEFPSNQLV 

       310        320        330        340        350        360 
APPAEKETQE HDDKFEDVTM GRDLEISIRR NCDLALEPKD EPLSKTTGIM RQDNSFEKSS 

       370        380        390        400        410        420 
SKWKMKVGKG PLDLSSESPS SKQMHEDGGS SFKAMSSHLQ DNREPEAPNT HLKTLDTNEA 

       430        440        450        460        470        480 
SVKISEELMH VEHSSKRHRG TKDDGTLVRD DRNVLRRSEG SAFSRYNPAS NANKISGGNL 

       490        500        510        520        530        540 
GSTSLQDNNS QDLIKKTEAA YDCHSNMNES LPHNHRSHVG SNNFDMSSTT ENNAFTKPGA 

       550        560        570        580        590        600 
PKVSSAGSSS VKHSSFQPLP CDHHNNHASY NLVHVAERKK LPPQCGSSNV YNETIEGNNN 

       610        620        630        640        650        660 
TVNYSVNGSV SGSGHGSNGP YGSSNGMNAG GMNMGSDNGA GKNGNGDGSG SGSGSGSGNL 

       670        680        690        700        710        720 
ADENKISQRE AALTKFRQKR KERCFRKKVR YQSRKKLAEQ RPRVRGQFVR KTAAATDDND 


IKNIEDS

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock." Matsushika A., Makino S., Kojima M., Mizuno T. Plant Cell Physiol. 41:1002-1012(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE, FUNCTION.
[2]	"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. Fransz P.F. Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[4]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. Ecker J.R. Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[5]	"Genes encoding pseudo-response regulators: insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana." Makino S., Kiba T., Imamura A., Hanaki N., Nakamura A., Suzuki T., Taniguchi M., Ueguchi C., Sugiyama T., Mizuno T. Plant Cell Physiol. 41:791-803(2000) [PubMed] [Europe PMC] [Abstract] Cited for: GENE FAMILY.
[6]	"Arabidopsis PSEUDO-RESPONSE REGULATOR 7 is a signaling intermediate in phytochrome-regulated seedling deetiolation and phasing of the circadian clock." Kaczorowski K.A., Quail P.H. Plant Cell 15:2654-2665(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB046954 mRNA. Translation: BAB13742.1. AL162973 Genomic DNA. Translation: CAB86035.1. Sequence problems. CP002688 Genomic DNA. Translation: AED90520.1. AY039943 mRNA. Translation: AAK64047.1. AY142560 mRNA. Translation: AAN13129.1.
IPI	IPI00520937.
PIR	T48302.
RefSeq	NP_568107.1. NM_120359.2.
UniGene	At.20552.
3D structure databases
ProteinModelPortal	Q93WK5.
SMR	Q93WK5. Positions 77-232.
ModBase	Search...
Protein-protein interaction databases
STRING	3702.AT5G02810.1-P.
Proteomic databases
PaxDb	Q93WK5.
PRIDE	Q93WK5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT5G02810.1; AT5G02810.1; AT5G02810.
GeneID	831793.
KEGG	ath:AT5G02810.
Organism-specific databases
GeneFarm	4348. 437.
TAIR	At5g02810.
Phylogenomic databases
eggNOG	COG3437.
HOGENOM	HOG000034018.
InParanoid	Q93WK5.
KO	K12129.
OMA	HDERNIL.
PhylomeDB	Q93WK5.
ProtClustDB	CLSN2917538.
Gene expression databases
Genevestigator	Q93WK5.
GermOnline	AT5G02810. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR010402. CCT_domain. IPR011006. CheY-like_superfamily. IPR001789. Sig_transdc_resp-reg_receiver. [Graphical view]
Pfam	PF06203. CCT. 1 hit. PF00072. Response_reg. 1 hit. [Graphical view]
SMART	SM00448. REC. 1 hit. [Graphical view]
SUPFAM	SSF52172. CheY_like. 1 hit.
PROSITE	PS51017. CCT. 1 hit. PS50110. RESPONSE_REGULATORY. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

APRR7_ARATH

Accession

Primary (citable) accession number: Q93WK5
Secondary accession number(s): Q9LZ04

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 27, 2004
Last sequence update:	December 1, 2001
Last modified:	May 1, 2013
This is version 82 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Regions

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Entry information

Relevant documents