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Q93VI8 (TLP7_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Tubby-like F-box protein 7
Short name=AtTLP7
Gene names
Name:TULP7
Ordered Locus Names:At1g53320
ORF Names:F12M16.22
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length379 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Tissue specificity

Ubiquitous. Ref.1

Sequence similarities

Belongs to the TUB family.

Contains 1 F-box domain.

Sequence caution

The sequence AAF69545.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 379379Tubby-like F-box protein 7
PRO_0000272235

Regions

Domain42 – 9756F-box

Sequences

Sequence LengthMass (Da)Tools
Q93VI8 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: B31C395DE99E1164

FASTA37942,178
        10         20         30         40         50         60 
MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE 

        70         80         90        100        110        120 
ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT FPSCLKLPGP RDFSNQCLIK 

       130        140        150        160        170        180 
RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR 

       190        200        210        220        230        240 
SDFLGTNFTV YDSQPPHNGA KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR 

       250        260        270        280        290        300 
GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL 

       310        320        330        340        350        360 
QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS 

       370 
AFQAFAICLT SFGTKLACE

« Hide

References

« Hide 'large scale' references
[1]"Molecular analyses of the Arabidopsis TUBBY-like protein gene family."
Lai C.-P., Lee C.-L., Chen P.-H., Wu S.-H., Yang C.-C., Shaw J.-F.
Plant Physiol. 134:1586-1597(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, NOMENCLATURE.
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY092403 mRNA. Translation: AAM18187.1.
AC008007 Genomic DNA. Translation: AAF69545.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE32924.1.
AF370146 mRNA. Translation: AAK43961.1.
AY059088 mRNA. Translation: AAL15194.1.
IPIIPI00547085.
RefSeqNP_564627.1. NM_104210.3.
UniGeneAt.24299.

3D structure databases

HSSPHSSP built from PDB template 2FIM based on UniProtKB O00294.
ProteinModelPortalQ93VI8.
SMRQ93VI8. Positions 108-379.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G53320.1; AT1G53320.1; AT1G53320.
GeneID841766.
KEGGath:AT1G53320.

Organism-specific databases

TAIRAt1g53320.

Phylogenomic databases

eggNOGNOG286778.
HOGENOMHOG000238161.
InParanoidQ93VI8.
OMAGSNAYMG.
PhylomeDBQ93VI8.
ProtClustDBCLSN2688750.

Gene expression databases

GenevestigatorQ93VI8.

Family and domain databases

Gene3D3.20.90.10. 1 hit.
InterProIPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR018066. Tubby_C_CS.
[Graphical view]
PfamPF01167. Tub. 1 hit.
[Graphical view]
PRINTSPR01573. SUPERTUBBY.
SUPFAMSSF54518. Tubby_C. 1 hit.
PROSITEPS50181. FBOX. False negative.
PS01200. TUB_1. 1 hit.
PS01201. TUB_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTLP7_ARATH
AccessionPrimary (citable) accession number: Q93VI8
Secondary accession number(s): Q9MAG9
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: December 1, 2001
Last modified: May 1, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents