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Protein

Ribulose bisphosphate carboxylase-like protein

Gene

Alvin_2545

Organism
Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (Chromatium vinosum)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity (By similarity).By similarity

Cofactori

Mg2+By similarityNote: Binds 1 Mg2+ ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi199 – 1991Magnesium; via carbamate groupSequence Analysis
Metal bindingi201 – 2011MagnesiumBy similarity
Metal bindingi202 – 2021MagnesiumBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciAVIN572477:GCJK-2600-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase-like protein
Short name:
RuBisCO-like protein
Gene namesi
Ordered Locus Names:Alvin_2545
ORF Names:ORF457
OrganismiAllochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (Chromatium vinosum)
Taxonomic identifieri572477 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeAllochromatium
ProteomesiUP000001441 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 457457Ribulose bisphosphate carboxylase-like proteinPRO_0000062681Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei199 – 1991N6-carboxylysineSequence Analysis

Interactioni

Protein-protein interaction databases

STRINGi572477.Alvin_2545.

Structurei

3D structure databases

ProteinModelPortaliQ93UZ0.
SMRiQ93UZ0. Positions 1-430.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

Q93UZ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTASDWAGFF ADEASLDREA YLFLDYYLEC SGDPELAAAH FCSEQSTAQW
60 70 80 90 100
RRVGSDEDLR PRFGARVVDL QILDGARPEF SYGVGSGSDA PVTACRLRIA
110 120 130 140 150
HPHGNFGPRL PNLLSAICGE GTFFSPGAPI VKLLDIEFPE SYLACFQGPQ
160 170 180 190 200
FGVAGLRERL QVHDRPIFFG VIKPNIGLPP EAFSELGHES WLGGLDIAKD
210 220 230 240 250
DEMLADTDWC PLDRRAELLG EARRRAEAAT GVPKIYLANI TDEVDRLVEL
260 270 280 290 300
HDRAVERGAN ALLINAMPTG LSAVRMLRKH AQVPLMAHFP FIAPFARLER
310 320 330 340 350
FGVHTRVFTK LQRLAGYDVI IMPGFGPRMH MTDDEVRACA TACLEPMGPI
360 370 380 390 400
KPSLPVPGGS DWAGTLRPLY EKLGTVDFGF VPGRGVFGHP MGPRAGAASI
410 420 430 440 450
RQAWEAIVAG ETLEERAKRH PELSAAIAAF GKPAHGQAAS PQPSEQASEP

DAAGGDS
Length:457
Mass (Da):49,562
Last modified:December 1, 2001 - v1
Checksum:i42CD47B503185D38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB050620 Genomic DNA. Translation: BAB44150.1.
CP001896 Genomic DNA. Translation: ADC63455.1.
RefSeqiWP_012971724.1. NC_013851.1.

Genome annotation databases

EnsemblBacteriaiADC63455; ADC63455; Alvin_2545.
KEGGialv:Alvin_2545.
PATRICi31924862. VBIAllVin64954_2510.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB050620 Genomic DNA. Translation: BAB44150.1.
CP001896 Genomic DNA. Translation: ADC63455.1.
RefSeqiWP_012971724.1. NC_013851.1.

3D structure databases

ProteinModelPortaliQ93UZ0.
SMRiQ93UZ0. Positions 1-430.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi572477.Alvin_2545.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADC63455; ADC63455; Alvin_2545.
KEGGialv:Alvin_2545.
PATRICi31924862. VBIAllVin64954_2510.

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.

Enzyme and pathway databases

BioCyciAVIN572477:GCJK-2600-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 2 hits.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Transcription of three sets of genes coding for the core light-harvesting proteins in the purple sulfur bacterium, Allochromatium vinosum."
    Nagashima S., Shimada K., Matsuura K., Nagashima K.V.P.
    Photosyn. Res. 74:269-280(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete sequence of chromosome of Allochromatium vinosum DSM 180."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Zigann R., Dahl C., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D.

Entry informationi

Entry nameiRBLL_ALLVD
AccessioniPrimary (citable) accession number: Q93UZ0
Secondary accession number(s): D3RP65
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: December 1, 2001
Last modified: July 22, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.