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Q93TK0 (Q93TK0_RHOPL) Unreviewed, UniProtKB/TrEMBL

Last modified September 18, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:badA EMBL AAK39104.1
OrganismRhodopseudomonas palustris EMBL AAK39104.1
Taxonomic identifier1076 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length523 AA.
Sequence statusFragment.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Molecular functionLigase EMBL AAK39104.1
   Technical term3D-structure PDB 4EAT
Gene Ontology (GO)
   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

acid-thiol ligase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAK39104.1

Sequences

Sequence LengthMass (Da)Tools
Q93TK0 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: B3B8F5FEE1B2B748

FASTA52356,598
        10         20         30         40         50         60 
NAAAVTPPPE KFNFAEHLLQ TNRVRPDKTA FVDDISSLSF AQLEAQTRQL AAALRAIGVK 

        70         80         90        100        110        120 
REERVLLLML DGTDWPVAFL GTIYAGIVPV AVNTLLTADD YAYMLEHSRA QAVLVSGALH 

       130        140        150        160        170        180 
PVLKAALTKS DHEVQRVIVS RPAAPLEPGE VDFAEFVGAH APLEKPAATQ ADDPAFWLYS 

       190        200        210        220        230        240 
SGSTGRPKGV VHTHANPYWT SELYGRNTLH LREDDVCFSA AKLFFAYGLG NALTFPMTVG 

       250        260        270        280        290        300 
ATTLLMGERP TPDAVFKRWL GGVGGVKPTV FYGAPTGYAG MLAAPNLPSR DQVALRLASS 

       310        320        330        340        350        360 
AGEALPAEIG QRFQRHFGLD IVDGIGSTEM LHIFLSNLPG RVRYGTTGWP VPGYQIELRG 

       370        380        390        400        410        420 
DGGGPVADGE PGDLYIHGPS SATMYWGNRA KSRDTFQGGW TKSGDKYVRN DDGSYTYAGR 

       430        440        450        460        470        480 
TDDMLKVSGI YVSPFEIEAT LVQHPGVLEA AVVGVADEHG LTKPKAYVVP RPGQTLSETE 

       490        500        510        520 
LKTFIKDRLA PYKYPRSTVF VAELPKTATG KIQRFKLREG VLS 

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References

[1]"Analysis of diversity among 3-chlorobenzoate-degrading strains of Rhodopseudomonas palustris."
Oda Y., Meijer W.G., Gibson J.L., Gottschal J.C., Forney L.J.
Microb. Ecol. 47:68-79(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DCP3 EMBL AAK39104.1.
[2]"Crystal Structure of the Rhodopseudomanas palustris benzoate coenzyme A ligase."
Geiger J., Strom S., Walker K., Thornburg C.
Submitted (MAR-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 1-522.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF355195 Genomic DNA. Translation: AAK39104.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4EATX-ray1.80A/B1-522[»]
ProteinModelPortalQ93TK0.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR025110. AMP-bd_C.
IPR000873. AMP-dep_Synth/Lig.
IPR011957. Benz_CoA_lig.
[Graphical view]
PfamPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
TIGRFAMsTIGR02262. benz_CoA_lig. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ93TK0_RHOPL
AccessionPrimary (citable) accession number: Q93TK0
Entry history
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: September 18, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)