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Protein
Submitted name:

Cytochrome c

Gene

soxX

Organism
Rhodovulum sulfidophilum (Rhodobacter sulfidophilus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei64 – 641Heme (covalent)Combined sources
Binding sitei67 – 671Heme (covalent)Combined sources
Metal bindingi68 – 681Iron (heme axial ligand); via tele nitrogenCombined sources
Metal bindingi114 – 1141Iron (heme axial ligand)Combined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

HemeCombined sources, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Cytochrome cImported
Gene namesi
Name:soxXImported
OrganismiRhodovulum sulfidophilum (Rhodobacter sulfidophilus)Imported
Taxonomic identifieri35806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodovulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 160138Sequence analysisPRO_5004319524Add
BLAST

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1H31X-ray2.55B/D/F/H23-160[»]
1H32X-ray1.50B23-160[»]
1H33X-ray1.75B23-160[»]
2OZ1X-ray2.35B/D/F/H23-160[»]
ProteinModelPortaliQ939U4.
SMRiQ939U4. Positions 23-160.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ939U4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini47 – 159113Cytochrome cInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
InterProiIPR009056. Cyt_c-like_dom.
IPR030999. Thiosulf_SoxX.
[Graphical view]
PfamiPF00034. Cytochrom_C. 1 hit.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 1 hit.
TIGRFAMsiTIGR04485. thiosulf_SoxX. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q939U4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGMGLTTAC IALWASAGPG PAAEVAPGDV AIDGQGHVAR PLTDAPGDPV
60 70 80 90 100
EGRRLMTDRS VGNCIACHEV TEMADAQFPG TVGPSLDGVA ARYPEAMIRG
110 120 130 140 150
ILVNSKNVFP ETVMPAYYRV EGFNRPGIAF TSKPIEGEIR PLMTAGQIED
160
VVAYLMTLTQ
Length:160
Mass (Da):16,858
Last modified:December 1, 2001 - v1
Checksum:i605D564467347878
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY005800 Genomic DNA. Translation: AAF99431.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY005800 Genomic DNA. Translation: AAF99431.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1H31X-ray2.55B/D/F/H23-160[»]
1H32X-ray1.50B23-160[»]
1H33X-ray1.75B23-160[»]
2OZ1X-ray2.35B/D/F/H23-160[»]
ProteinModelPortaliQ939U4.
SMRiQ939U4. Positions 23-160.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ939U4.

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
InterProiIPR009056. Cyt_c-like_dom.
IPR030999. Thiosulf_SoxX.
[Graphical view]
PfamiPF00034. Cytochrom_C. 1 hit.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 1 hit.
TIGRFAMsiTIGR04485. thiosulf_SoxX. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ939U4_RHOSU
AccessioniPrimary (citable) accession number: Q939U4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: March 16, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.