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Protein
Submitted name:

Seven WD repeats, AN11 family

Gene

swan-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • response to heat Source: WormBase
  • response to osmotic stress Source: WormBase

Enzyme and pathway databases

ReactomeiR-CEL-8951664. Neddylation.
SignaLinkiQ93759.

Names & Taxonomyi

Protein namesi
Submitted name:
Seven WD repeats, AN11 familyImported
Gene namesi
Name:swan-2Imported
ORF Names:CELE_F53C11.7Imported, F53C11.7Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF53C11.7; CE24997; WBGene00009976; swan-2.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiQ93759.
PaxDbiQ93759.
PeptideAtlasiQ93759.

Expressioni

Gene expression databases

BgeeiWBGene00009976.

Interactioni

Protein-protein interaction databases

STRINGi6239.F53C11.7.1.

Structurei

3D structure databases

ProteinModelPortaliQ93759.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini251 – 440WD_REPEATS_REGIONInterPro annotationAdd BLAST190
Repeati308 – 350WDPROSITE-ProRule annotationAdd BLAST43
Repeati398 – 432WDPROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0290. Eukaryota.
ENOG410XQ78. LUCA.
GeneTreeiENSGT00390000006939.
HOGENOMiHOG000260968.
InParanoidiQ93759.
KOiK11805.
OMAiGSHICTA.
OrthoDBiEOG091G08UU.
PhylomeDBiQ93759.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiView protein in InterPro
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
IPR036322. WD40_repeat_dom_sf.
PfamiView protein in Pfam
PF00400. WD40. 2 hits.
SMARTiView protein in SMART
SM00320. WD40. 4 hits.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

Q93759-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIDQSQAAPS SSTSSSHLMH HHSNNYPSYT NPSASSSNHS NMGHPNASTG
60 70 80 90 100
QTSAVQRMDP FNQIPSELYG SASSTSIAAS TRQPSSQSQP SQQFRQMPAD
110 120 130 140 150
LGASTSTMHS VAPIDIYDNY GNASTSDLRR SSVRGDPRRK EIYAYNAPFT
160 170 180 190 200
LFSHGWSAAT DPSRKFRLAV SSFIEEYSNK IHIVQLDEEA GELVHRSTFD
210 220 230 240 250
HPYPATKIMW IPDQKGTFPD LLATSGDYLR LWRIGTDNNA CIESLLNTNR
260 270 280 290 300
TAEYCAPLTS FDWNELDMNL IGTSSIDTTC TVWQLETGQA IGTTRPTAAI
310 320 330 340 350
DGTVRTQLIA HDKEVFDISF SRGSAQIFAS VGADGSLRLF DLRRLEHSTI
360 370 380 390 400
MYEDPQRQPL LRLAWNRNDH NYIATFGQDS KEVLILDLRL PCTPVARLRN
410 420 430 440 450
HEATINGLSW APHSGSHICT AGDDYQALIW DVHEMPKPIN DPILAYRAQA
460 470
EVNQIHWSSS FPDWISICSD NKLEILRV
Length:478
Mass (Da):53,196
Last modified:May 1, 2000 - v2
Checksum:i663E13EBA3E95096
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB02116.2.
PIRiT22554.
RefSeqiNP_506417.1. NM_074016.5.
UniGeneiCel.17355.

Genome annotation databases

EnsemblMetazoaiF53C11.7.1; F53C11.7.1; WBGene00009976.
F53C11.7.2; F53C11.7.2; WBGene00009976.
GeneIDi179875.
KEGGicel:CELE_F53C11.7.
UCSCiF53C11.7.1. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiQ93759_CAEEL
AccessioniPrimary (citable) accession number: Q93759
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: May 1, 2000
Last modified: October 25, 2017
This is version 138 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported