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Protein
Submitted name:

Seven WD repeats, AN11 family

Gene

swan-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

SignaLinkiQ93759.

Names & Taxonomyi

Protein namesi
Submitted name:
Seven WD repeats, AN11 familyImported
Gene namesi
Name:swan-2Imported
ORF Names:CELE_F53C11.7Imported, F53C11.7Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF53C11.7; CE24997; WBGene00009976; swan-2.

PTM / Processingi

Proteomic databases

EPDiQ93759.
PaxDbiQ93759.

Expressioni

Gene expression databases

BgeeiWBGene00009976.

Interactioni

Protein-protein interaction databases

STRINGi6239.F53C11.7.1.

Structurei

3D structure databases

ProteinModelPortaliQ93759.
SMRiQ93759. Positions 201-437.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini251 – 440190WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0290. Eukaryota.
ENOG410XQ78. LUCA.
GeneTreeiENSGT00390000006939.
HOGENOMiHOG000260968.
InParanoidiQ93759.
KOiK11805.
OMAiSFSWNEK.
OrthoDBiEOG091G08UU.
PhylomeDBiQ93759.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q93759-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIDQSQAAPS SSTSSSHLMH HHSNNYPSYT NPSASSSNHS NMGHPNASTG
60 70 80 90 100
QTSAVQRMDP FNQIPSELYG SASSTSIAAS TRQPSSQSQP SQQFRQMPAD
110 120 130 140 150
LGASTSTMHS VAPIDIYDNY GNASTSDLRR SSVRGDPRRK EIYAYNAPFT
160 170 180 190 200
LFSHGWSAAT DPSRKFRLAV SSFIEEYSNK IHIVQLDEEA GELVHRSTFD
210 220 230 240 250
HPYPATKIMW IPDQKGTFPD LLATSGDYLR LWRIGTDNNA CIESLLNTNR
260 270 280 290 300
TAEYCAPLTS FDWNELDMNL IGTSSIDTTC TVWQLETGQA IGTTRPTAAI
310 320 330 340 350
DGTVRTQLIA HDKEVFDISF SRGSAQIFAS VGADGSLRLF DLRRLEHSTI
360 370 380 390 400
MYEDPQRQPL LRLAWNRNDH NYIATFGQDS KEVLILDLRL PCTPVARLRN
410 420 430 440 450
HEATINGLSW APHSGSHICT AGDDYQALIW DVHEMPKPIN DPILAYRAQA
460 470
EVNQIHWSSS FPDWISICSD NKLEILRV
Length:478
Mass (Da):53,196
Last modified:May 1, 2000 - v2
Checksum:i663E13EBA3E95096
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB02116.2.
PIRiT22554.
RefSeqiNP_506417.1. NM_074016.5.
UniGeneiCel.17355.

Genome annotation databases

EnsemblMetazoaiF53C11.7.1; F53C11.7.1; WBGene00009976.
F53C11.7.2; F53C11.7.2; WBGene00009976.
GeneIDi179875.
KEGGicel:CELE_F53C11.7.
UCSCiF53C11.7.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB02116.2.
PIRiT22554.
RefSeqiNP_506417.1. NM_074016.5.
UniGeneiCel.17355.

3D structure databases

ProteinModelPortaliQ93759.
SMRiQ93759. Positions 201-437.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F53C11.7.1.

Proteomic databases

EPDiQ93759.
PaxDbiQ93759.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF53C11.7.1; F53C11.7.1; WBGene00009976.
F53C11.7.2; F53C11.7.2; WBGene00009976.
GeneIDi179875.
KEGGicel:CELE_F53C11.7.
UCSCiF53C11.7.1. c. elegans.

Organism-specific databases

CTDi179875.
WormBaseiF53C11.7; CE24997; WBGene00009976; swan-2.

Phylogenomic databases

eggNOGiKOG0290. Eukaryota.
ENOG410XQ78. LUCA.
GeneTreeiENSGT00390000006939.
HOGENOMiHOG000260968.
InParanoidiQ93759.
KOiK11805.
OMAiSFSWNEK.
OrthoDBiEOG091G08UU.
PhylomeDBiQ93759.

Enzyme and pathway databases

SignaLinkiQ93759.

Gene expression databases

BgeeiWBGene00009976.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ93759_CAEEL
AccessioniPrimary (citable) accession number: Q93759
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 127 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.