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Protein
Submitted name:

GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase

Gene

gngC

Organism
Clostridium perfringens
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi37 – 371Calcium; via carbonyl oxygenCombined sources
Metal bindingi39 – 391CalciumCombined sources
Metal bindingi72 – 721Calcium; via carbonyl oxygenCombined sources
Metal bindingi272 – 2721CalciumCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources

Protein family/group databases

CAZyiGH16. Glycoside Hydrolase Family 16.

Names & Taxonomyi

Protein namesi
Submitted name:
GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidaseImported
Gene namesi
Name:gngCImported
OrganismiClostridium perfringensImported
Taxonomic identifieri1502 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1717Sequence analysisAdd
BLAST
Chaini18 – 420403Sequence analysisPRO_5004319784Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi57 ↔ 86Combined sources

Interactioni

Protein-protein interaction databases

STRINGi195103.CPF_1119.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UPSX-ray1.82A/B1-420[»]
ProteinModelPortaliQ934G8.
SMRiQ934G8. Positions 17-420.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ934G8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini18 – 282265GH16 (glycosyl hydrolase family 16)InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108U5X. Bacteria.
ENOG4111I09. LUCA.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR000757. GH16.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF00722. Glyco_hydro_16. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
SSF50370. SSF50370. 1 hit.
PROSITEiPS51762. GH16_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q934G8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFVFMLLLLL PFTISKAKDF PANPIEKAGY KLDFSDEFNG PTLDREKWTD
60 70 80 90 100
YYLPHWCKDP ESAKANYRFE NGSLVEYITE DQKPWCPEHD GTVRSSAIMS
110 120 130 140 150
FDKSWIHNFS GTTDNHERNE WRGYTTKYGY FEIRAKLSNT GGGGHQAWWM
160 170 180 190 200
VGMQDDTNDW FNSKQTGEID ILETFFSKKD TWRIAAYGWN DPNFQTSWTI
210 220 230 240 250
SEDKVPSGDP TSEYHIYAME WTPTALKFYY DNELFKVIYG SPDYEMGTIL
260 270 280 290 300
NIYTDAGSGA HNDVWPKEWA IDYMRVWKPV DGYKESESLN NYLIRNRQTG
310 320 330 340 350
KFLYIEENND KVSYGDITLK NEKNAKWSKE YRDGYTLLKN NETGEYLNIE
360 370 380 390 400
NQTGYIEHGK VPKTWWSAQW SEVPVDGYTR FVNRWKPNMS IHTESYEGVL
410 420
QYGNVPNTYW TSQWQLIPVE
Length:420
Mass (Da):49,377
Last modified:December 1, 2001 - v1
Checksum:iF288D16FA0E5FB6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB059351 Genomic DNA. Translation: BAB69460.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB059351 Genomic DNA. Translation: BAB69460.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UPSX-ray1.82A/B1-420[»]
ProteinModelPortaliQ934G8.
SMRiQ934G8. Positions 17-420.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi195103.CPF_1119.

Protein family/group databases

CAZyiGH16. Glycoside Hydrolase Family 16.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4108U5X. Bacteria.
ENOG4111I09. LUCA.

Miscellaneous databases

EvolutionaryTraceiQ934G8.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR000757. GH16.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF00722. Glyco_hydro_16. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
SSF50370. SSF50370. 1 hit.
PROSITEiPS51762. GH16_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Characterization of a novel endo-beta-galactosidase specific for releasing the disaccharide GlcNAc alpha 1-->4Gal from glycoconjugates."
    Ashida H., Maskos K., Li S.-C., Li Y.-T.
    Biochemistry 41:2388-2395(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC10543Imported.
  2. "Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens."
    Tempel W., Liu Z.J., Horanyi P.S., Deng L., Lee D., Newton M.G., Rose J.P., Ashida H., Li S.C., Li Y.T., Wang B.C.
    Proteins 59:141-144(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.82 ANGSTROMS) IN COMPLEX WITH CALCIUM, DISULFIDE BONDS.

Entry informationi

Entry nameiQ934G8_CLOPF
AccessioniPrimary (citable) accession number: Q934G8
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: April 13, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.