Q934G8 (Q934G8_CLOPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase EMBL BAB69460.1

Gene names

Name:

gngC EMBL BAB69460.1

Organism

Clostridium perfringens EMBL BAB69460.1

Taxonomic identifier

1502 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	420 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 1UPS Metal-binding PDB 1UPS
Technical term	3D-structure PDB 1UPS
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	18 – 420	403	Potential EMBL BAB69460.1		PRO_5000049697
Sites
	Metal binding	37	1	Calcium; via carbonyl oxygen PDB 1UPS
	Metal binding	39	1	Calcium PDB 1UPS
	Metal binding	72	1	Calcium; via carbonyl oxygen PDB 1UPS
	Metal binding	272	1	Calcium PDB 1UPS

Sequences

	Sequence		Length	Mass (Da)
	Q934G8 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: F288D16FA0E5FB6D	FASTA	420	49,377
	10 20 30 40 50 60 MFVFMLLLLL PFTISKAKDF PANPIEKAGY KLDFSDEFNG PTLDREKWTD YYLPHWCKDP 70 80 90 100 110 120 ESAKANYRFE NGSLVEYITE DQKPWCPEHD GTVRSSAIMS FDKSWIHNFS GTTDNHERNE 130 140 150 160 170 180 WRGYTTKYGY FEIRAKLSNT GGGGHQAWWM VGMQDDTNDW FNSKQTGEID ILETFFSKKD 190 200 210 220 230 240 TWRIAAYGWN DPNFQTSWTI SEDKVPSGDP TSEYHIYAME WTPTALKFYY DNELFKVIYG 250 260 270 280 290 300 SPDYEMGTIL NIYTDAGSGA HNDVWPKEWA IDYMRVWKPV DGYKESESLN NYLIRNRQTG 310 320 330 340 350 360 KFLYIEENND KVSYGDITLK NEKNAKWSKE YRDGYTLLKN NETGEYLNIE NQTGYIEHGK 370 380 390 400 410 420 VPKTWWSAQW SEVPVDGYTR FVNRWKPNMS IHTESYEGVL QYGNVPNTYW TSQWQLIPVE

References

[1]	"Characterization of a novel endo-beta-galactosidase specific for releasing the disaccharide GlcNAc alpha 1-->4Gal from glycoconjugates." Ashida H., Maskos K., Li S.C., Li Y.T. Biochemistry 41:2388-2395(2002) [PubMed: 11841232] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC10543 EMBL BAB69460.1.
[2]	"Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens." Tempel W., Liu Z.J., Horanyi P.S., Deng L., Lee D., Newton M.G., Rose J.P., Ashida H., Li S.C., Li Y.T., Wang B.C. Proteins 59:141-144(2005) [PubMed: 15688452] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.82 ANGSTROMS) IN COMPLEX WITH CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AB059351 Genomic DNA. Translation: BAB69460.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1UPS	X-ray	1.82	A/B	1-420	[»]

ProteinModelPortal

Q934G8.

SMR

Q934G8. Positions 17-420.

ModBase

Search...

Protein family/group databases

CAZy

GH16. Glycoside Hydrolase Family 16.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
IPR000757. Glyco_hydro_16.
IPR008997. Ricin_B-rel_lectin.
[Graphical view]

Gene3D

G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.

Pfam

PF00722. Glyco_hydro_16. 1 hit.
[Graphical view]

SUPFAM

SSF49899. ConA_like_lec_gl. 1 hit.
SSF50370. RicinB_like. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q934G8_CLOPE

Accession

Primary (citable) accession number: Q934G8

Entry history

Integrated into UniProtKB/TrEMBL:	December 1, 2001
Last sequence update:	December 1, 2001
Last modified:	February 8, 2011
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)