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Q93413 (Q93413_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 119. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:drh-3 EMBL CAB02082.3 WormBase D2005.5
ORF Names:CELE_D2005.5 EMBL CAB02082.3, D2005.5 WormBase D2005.5
OrganismCaenorhabditis elegans [Reference proteome] EMBL CAB02082.3
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length1119 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Binary interactions

With

Entry

#Exp.

IntAct

Notes

rrf-1G5ECM12EBI-866549,EBI-7692364

Sequences

Sequence LengthMass (Da)Tools
Q93413 [UniParc].

Last modified July 5, 2004. Version 3.
Checksum: EDBDA9994166DF5A

FASTA1,119129,096
        10         20         30         40         50         60 
MQPTAIRLED YDKSKLRLPF ESPYFPAYFR LLKWKFLDVC VESTRNNDIG YFKLFESLFP 

        70         80         90        100        110        120 
PGKLEEIARM IIDEPTPVSH DPDMIKIRNA DLDVKIRKQA ETYVTLRHAH QQKVQRRRFS 

       130        140        150        160        170        180 
ECFLNTVLFD EKGLRIADEV MFNYDKELYG YSHWEDLPDG WLTAETFKNK FYDEEEVTNN 

       190        200        210        220        230        240 
PFGYQKLDRV AGAARGMIIM KHLKSNPRCV SETTILAFEV FNKGNHQLST DLVEDLLTEG 

       250        260        270        280        290        300 
PAFELKIENG EEKKYAVKKW SLHKTLTMFL AIIGFKSNDK KEKNEHEEWY YGFIDAMKND 

       310        320        330        340        350        360 
PANRAALYFL DKNWPEELEE REKERDRIRL TLLKSQRTNE EAVGEDVCTT IRPQPKDSGY 

       370        380        390        400        410        420 
NPDAVVTELV LRTYQEELVQ PALEGKNCVI VAPTGSGKTE VAIYAALKHI EERTSQGKPS 

       430        440        450        460        470        480 
RVVLLVPKIP LVGQQKDRFL KYCNGMYEVN GFHGSESSVS GTGRRDEVIA THVSVMTPQI 

       490        500        510        520        530        540 
LINMLQSVRQ NERLYVSDFS MMIFDEVHKA AKNHPYVLIN QMVQEWKYEK PQIIGLTASL 

       550        560        570        580        590        600 
SVKVDGQKDE NQMLNDIYNM LALINAPHLS TITRQSSIDE LNEHVGKPDD SVELCLPAKE 

       610        620        630        640        650        660 
NILRDYIERY LNHAHGKFLE ELASMSKSTG RNNTIPPNMI NTFKKNQPKN YEYYDSLLQG 

       670        680        690        700        710        720 
IIQELNKLNV PEKWNSQTWA KYMKVYLEAR GIVDLMPAMV AFKYMEKAIG KLNESHSETV 

       730        740        750        760        770        780 
EYSTFIKDHD TLKQTIQSVE PEIVLRLKNT LTNQFHVAPE SRVIIFVTQR STAQRVSDFL 

       790        800        810        820        830        840 
NESKVLDQFG NYGEQMVGYV LGTNKQGAVQ QTSQEQQLTL DKFNNGRLKV IVATSVVEEG 

       850        860        870        880        890        900 
LDVTACNLII KYNCSSGSAI QLVQQRGRAR AKNSRSVLLS VKSSINETET NALISEKYMR 

       910        920        930        940        950        960 
LCVKKITENG EKQLAAEVKR VAELNAAERK RNLEEQLNLR LRHENKIYKL MCSNCSKEFC 

       970        980        990       1000       1010       1020 
KSIYIKKVFS NYMVFDPSVW RFLHVESKRK VSKYLSEDNQ PLSDIKCFHC KLDVGRAYKI 

      1030       1040       1050       1060       1070       1080 
RGTYLPQLSV KALTFVQESD YSSMTKAKWS DVEQDLFYIS EAIEDDFRIM LNALSDTEEN 

      1090       1100       1110 
IEKKIVLDLD SRQHNKQLEM KRFHIQQEPP TKGVAPEAQ 

« Hide

References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z79752 Genomic DNA. Translation: CAB02082.3.
PIRT20332.
RefSeqNP_492161.3. NM_059760.5.
UniGeneCel.16985.

3D structure databases

ProteinModelPortalQ93413.
SMRQ93413. Positions 345-921.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-35120N.
IntActQ93413. 3 interactions.
MINTMINT-6178703.
STRING6239.D2005.5.

Proteomic databases

PaxDbQ93413.
PRIDEQ93413.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaD2005.5; D2005.5; WBGene00008400.
GeneID172546.
KEGGcel:CELE_D2005.5.
UCSCD2005.5. c. elegans.

Organism-specific databases

CTD172546.
WormBaseD2005.5; CE36120; WBGene00008400; drh-3.

Phylogenomic databases

eggNOGCOG1111.
GeneTreeENSGT00510000046789.
HOGENOMHOG000018535.
InParanoidQ93413.
KOK12646.
OMAALISEKF.
OrthoDBEOG7B8S3M.
PhylomeDBQ93413.

Family and domain databases

Gene3D3.40.50.300. 2 hits.
InterProIPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR021673. RIG-I_C-RD.
[Graphical view]
PfamPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
PF11648. RIG-I_C-RD. 1 hit.
[Graphical view]
SMARTSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 2 hits.
PROSITEPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio875985.

Entry information

Entry nameQ93413_CAEEL
AccessionPrimary (citable) accession number: Q93413
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: July 5, 2004
Last modified: July 9, 2014
This is version 119 of the entry and version 3 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)