Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Yeast PRP (Splicing factor) related

Gene

prp-4

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

SignaLinkiQ93339.

Names & Taxonomyi

Protein namesi
Submitted name:
Yeast PRP (Splicing factor) relatedImported
Gene namesi
Name:prp-4Imported
ORF Names:C36B1.5Imported, CELE_C36B1.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC36B1.5; CE05372; WBGene00007972; prp-4.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiQ93339.
PaxDbiQ93339.
PeptideAtlasiQ93339.

Expressioni

Gene expression databases

BgeeiWBGene00007972.

Interactioni

Protein-protein interaction databases

DIPiDIP-26822N.
IntActiQ93339. 1 interactor.
MINTiMINT-1102466.
STRINGi6239.C36B1.5.1.

Structurei

3D structure databases

ProteinModelPortaliQ93339.
SMRiQ93339.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini200 – 496WD_REPEATS_REGIONInterPro annotationAdd BLAST297
Repeati292 – 333WDPROSITE-ProRule annotationAdd BLAST42
Repeati334 – 375WDPROSITE-ProRule annotationAdd BLAST42
Repeati376 – 417WDPROSITE-ProRule annotationAdd BLAST42
Repeati418 – 459WDPROSITE-ProRule annotationAdd BLAST42
Repeati460 – 496WDPROSITE-ProRule annotationAdd BLAST37

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0272. Eukaryota.
ENOG410XNP8. LUCA.
GeneTreeiENSGT00810000125363.
HOGENOMiHOG000157615.
InParanoidiQ93339.
KOiK12662.
OMAiDSSWRLW.
OrthoDBiEOG091G0HXT.
PhylomeDBiQ93339.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiView protein in InterPro
IPR020472. G-protein_beta_WD-40_rep.
IPR014906. PRP4-like.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
PfamiView protein in Pfam
PF08799. PRP4. 1 hit.
PF00400. WD40. 6 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00500. SFM. 1 hit.
SM00320. WD40. 7 hits.
SUPFAMiSSF158230. SSF158230. 1 hit.
SSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

Q93339-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENGNFAVP APPRQFGSLA NAESVNAILN AQQQNHGPTV SLERMEVSNQ
60 70 80 90 100
ADSRHDAEMF AEFDRRRRAR TLTLPTDDVQ VKLKLRALNQ PICLFGEDAL
110 120 130 140 150
DRRERLRALL STMSEDEIAA VLHTDEVNAD KADEETVTWY HRGPIELRMA
160 170 180 190 200
RVSIADFSLR KAKLRLDKAR EEAARPAHEK ALARQEAHKW VQQINLHASQ
210 220 230 240 250
VADTRPVAFC EFSADSEHIV TAGWSGSVAV WKREQCAQEI KFIGHSSQAG
260 270 280 290 300
CARFHPGAFT QNDYSSLNVV SCSYDGTVLL WSLSQESPIG ELEQHPQRVS
310 320 330 340 350
KVAFHPNGHH LATACFDSTW RMYDLTTKKE LLYQEGHSKS VADVAFHPDG
360 370 380 390 400
SVALTGGHDC YGRVWDMRTG RCIMFLDGHT KEIHSVEWMP NGYEMITGSS
410 420 430 440 450
DNSMKVWDLR MRRNTYTMPA HTSVVTRVRA DAAGQYLVSA SFDCTLKMWS
460 470 480 490
TTGWQPLRQL QGHDTRILCV DISPDGQWMC SSAFDRTFKL WAQSDY
Length:496
Mass (Da):55,930
Last modified:February 1, 1997 - v1
Checksum:i925A310960C6A7C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB02270.1.
PIRiT19776.
RefSeqiNP_492363.1. NM_059962.3.
UniGeneiCel.19148.

Genome annotation databases

EnsemblMetazoaiC36B1.5; C36B1.5; WBGene00007972.
GeneIDi183250.
KEGGicel:CELE_C36B1.5.
UCSCiC36B1.5.1. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiQ93339_CAEEL
AccessioniPrimary (citable) accession number: Q93339
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: August 30, 2017
This is version 144 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported