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Protein
Submitted name:

Yeast PRP (Splicing factor) related

Gene

prp-4

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
SignaLinkiQ93339.

Names & Taxonomyi

Protein namesi
Submitted name:
Yeast PRP (Splicing factor) relatedImported
Gene namesi
Name:prp-4Imported
ORF Names:C36B1.5Imported, CELE_C36B1.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC36B1.5; CE05372; WBGene00007972; prp-4.

PTM / Processingi

Proteomic databases

EPDiQ93339.
PaxDbiQ93339.

Interactioni

Protein-protein interaction databases

DIPiDIP-26822N.
IntActiQ93339. 1 interaction.
MINTiMINT-1102466.
STRINGi6239.C36B1.5.1.

Structurei

3D structure databases

ProteinModelPortaliQ93339.
SMRiQ93339. Positions 164-494.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini200 – 496297WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0272. Eukaryota.
ENOG410XNP8. LUCA.
GeneTreeiENSGT00840000129797.
HOGENOMiHOG000157615.
InParanoidiQ93339.
KOiK12662.
OMAiAKWIASC.
OrthoDBiEOG7P5T0Z.
PhylomeDBiQ93339.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR027106. Prp4.
IPR014906. PRP4-like.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR19846. PTHR19846. 1 hit.
PfamiPF08799. PRP4. 1 hit.
PF00400. WD40. 6 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00500. SFM. 1 hit.
SM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF158230. SSF158230. 1 hit.
SSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q93339-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENGNFAVP APPRQFGSLA NAESVNAILN AQQQNHGPTV SLERMEVSNQ
60 70 80 90 100
ADSRHDAEMF AEFDRRRRAR TLTLPTDDVQ VKLKLRALNQ PICLFGEDAL
110 120 130 140 150
DRRERLRALL STMSEDEIAA VLHTDEVNAD KADEETVTWY HRGPIELRMA
160 170 180 190 200
RVSIADFSLR KAKLRLDKAR EEAARPAHEK ALARQEAHKW VQQINLHASQ
210 220 230 240 250
VADTRPVAFC EFSADSEHIV TAGWSGSVAV WKREQCAQEI KFIGHSSQAG
260 270 280 290 300
CARFHPGAFT QNDYSSLNVV SCSYDGTVLL WSLSQESPIG ELEQHPQRVS
310 320 330 340 350
KVAFHPNGHH LATACFDSTW RMYDLTTKKE LLYQEGHSKS VADVAFHPDG
360 370 380 390 400
SVALTGGHDC YGRVWDMRTG RCIMFLDGHT KEIHSVEWMP NGYEMITGSS
410 420 430 440 450
DNSMKVWDLR MRRNTYTMPA HTSVVTRVRA DAAGQYLVSA SFDCTLKMWS
460 470 480 490
TTGWQPLRQL QGHDTRILCV DISPDGQWMC SSAFDRTFKL WAQSDY
Length:496
Mass (Da):55,930
Last modified:February 1, 1997 - v1
Checksum:i925A310960C6A7C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB02270.1.
PIRiT19776.
RefSeqiNP_492363.1. NM_059962.3.
UniGeneiCel.19148.

Genome annotation databases

EnsemblMetazoaiC36B1.5; C36B1.5; WBGene00007972.
GeneIDi183250.
KEGGicel:CELE_C36B1.5.
UCSCiC36B1.5.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB02270.1.
PIRiT19776.
RefSeqiNP_492363.1. NM_059962.3.
UniGeneiCel.19148.

3D structure databases

ProteinModelPortaliQ93339.
SMRiQ93339. Positions 164-494.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-26822N.
IntActiQ93339. 1 interaction.
MINTiMINT-1102466.
STRINGi6239.C36B1.5.1.

Proteomic databases

EPDiQ93339.
PaxDbiQ93339.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC36B1.5; C36B1.5; WBGene00007972.
GeneIDi183250.
KEGGicel:CELE_C36B1.5.
UCSCiC36B1.5.1. c. elegans.

Organism-specific databases

CTDi183250.
WormBaseiC36B1.5; CE05372; WBGene00007972; prp-4.

Phylogenomic databases

eggNOGiKOG0272. Eukaryota.
ENOG410XNP8. LUCA.
GeneTreeiENSGT00840000129797.
HOGENOMiHOG000157615.
InParanoidiQ93339.
KOiK12662.
OMAiAKWIASC.
OrthoDBiEOG7P5T0Z.
PhylomeDBiQ93339.

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
SignaLinkiQ93339.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR027106. Prp4.
IPR014906. PRP4-like.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR19846. PTHR19846. 1 hit.
PfamiPF08799. PRP4. 1 hit.
PF00400. WD40. 6 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00500. SFM. 1 hit.
SM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF158230. SSF158230. 1 hit.
SSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ93339_CAEEL
AccessioniPrimary (citable) accession number: Q93339
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: June 8, 2016
This is version 132 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.