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Q93329 (Q93329_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 103. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein LEV-8 EMBL CAB01685.2
Gene names
Name:lev-8 EMBL CAB01685.2 WormBase C35C5.5
ORF Names:CELE_C35C5.5 EMBL CAB01685.2
OrganismCaenorhabditis elegans [Reference proteome] EMBL CAB01685.2
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length531 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification] RuleBase RU000687

Sequences

Sequence LengthMass (Da)Tools
Q93329 [UniParc].

Last modified October 1, 2003. Version 2.
Checksum: 55E0A50F6F222C9C

FASTA53160,721
        10         20         30         40         50         60 
MWIPQRISHI FLLVIFILHI VTINANKHVS QLLENLLTDY NKAVRPVHNA SDALKVKFGA 

        70         80         90        100        110        120 
NLCRLIDVDE VNQVLTTSLW LEMQWYDKKL TWNPTDWGGV EYIHIPSDQI WIPDIVLYNN 

       130        140        150        160        170        180 
ADGEPHITIT SLAKIDHHGR VVWQPPSIYK SFCPINIKYF PYDWQTCEMK FGGWSNDGET 

       190        200        210        220        230        240 
LDLYQIPVDV DDIPQVKRQD DGVEFLYLEK GLGLSFYHES AEWDLLSATS SRYAQIYPGC 

       250        260        270        280        290        300 
CGQQYYIDIK YRIIIRRKAI FFTVTLTIPC MLIANVTPFV FLILPNEHKM TYSISVLVAF 

       310        320        330        340        350        360 
SVFYLVLIDL IPPTSLSLSL IGIYLLFTLL MVSVSIILSV VTINMYRKQA FSSGMSHWQR 

       370        380        390        400        410        420 
WLFVQRLPKL LRLKTLEHTL GPDEGSETTT PRTGSVSVTA SVTQRTLNPN NNSPVFPPQR 

       430        440        450        460        470        480 
LRLLSLVQMD EALKQRCAAD NLDLFRKIAG HLKIISAHFH NQQMEGKITE EWQLMSLVID 

       490        500        510        520        530 
RIFLILFLAV SMAANIMFVY NSPTLFDDRP SLVPSVAHKP LSGGTINVLN T

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2 EMBL CAB01685.2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		Z78417 Genomic DNA. Translation: CAB01685.2.
PIRT19748.
RefSeqNP_509932.2. NM_077531.4.

3D structure databases

HSSPHSSP built from PDB template 1OED based on UniProtKB P02711.
ProteinModelPortalQ93329.
SMRQ93329. Positions 26-350.
ModBaseSearch...

Protein-protein interaction databases

MINTMINT-3383701.
STRING6239.C35C5.5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaC35C5.5; C35C5.5; C35C5.5.
GeneID191600.
KEGGcel:CELE_C35C5.5.

Organism-specific databases

CTD191600.
WormBaseC35C5.5; CE34160; WBGene00002975; lev-8.

Phylogenomic databases

eggNOGNOG300335.
GeneTreeENSGT00630000089708.
HOGENOMHOG000006756.
InParanoidQ93329.
OMALAKIDHH.

Family and domain databases

Gene3D2.70.170.10. 1 hit.
InterProIPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
IPR002394. Nicotinic_acetylcholine_rcpt.
[Graphical view]
PANTHERPTHR18945. PTHR18945. 1 hit.
PfamPF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
[Graphical view]
PRINTSPR00254. NICOTINICR.
PR00252. NRIONCHANNEL.
SUPFAMSSF90112. Neu_channel_TM. 1 hit.
SSF63712. Neur_chan_LBD. 1 hit.
PROSITEPS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio949628.

Entry information

Entry nameQ93329_CAEEL
AccessionPrimary (citable) accession number: Q93329
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: October 1, 2003
Last modified: May 1, 2013
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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