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Protein
Submitted name:

YTochrome B

Gene

cytb-5.1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

HemeUniRule annotationSAAS annotation, Iron, Metal-binding

Enzyme and pathway databases

ReactomeiR-CEL-196836. Vitamin C (ascorbate) metabolism.

Names & Taxonomyi

Protein namesi
Submitted name:
YTochrome BImported
Gene namesi
Name:cytb-5.1Imported
ORF Names:C31E10.7Imported, CELE_C31E10.7Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiC31E10.7; CE37487; WBGene00007848; cytb-5.1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei115 – 13218HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • perinuclear region of cytoplasm Source: WormBase
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ93315.
PaxDbiQ93315.

Interactioni

Protein-protein interaction databases

DIPiDIP-27359N.
MINTiMINT-1124106.
STRINGi6239.C31E10.7.2.

Structurei

3D structure databases

ProteinModelPortaliQ93315.
SMRiQ93315. Positions 4-79.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 8077Cytochrome b5 heme-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the cytochrome b5 family.UniRule annotationSAAS annotation
Contains 1 cytochrome b5 heme-binding domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiKOG0537. Eukaryota.
COG5274. LUCA.
GeneTreeiENSGT00510000046507.
HOGENOMiHOG000039853.
InParanoidiQ93315.
OMAiHSTDARH.
PhylomeDBiQ93315.

Family and domain databases

Gene3Di3.10.120.10. 1 hit.
InterProiIPR001199. Cyt_B5-like_heme/steroid-bd.
IPR018506. Cyt_B5_heme-BS.
[Graphical view]
PfamiPF00173. Cyt-b5. 1 hit.
[Graphical view]
PRINTSiPR00363. CYTOCHROMEB5.
SMARTiSM01117. Cyt-b5. 1 hit.
[Graphical view]
SUPFAMiSSF55856. SSF55856. 1 hit.
PROSITEiPS00191. CYTOCHROME_B5_1. 1 hit.
PS50255. CYTOCHROME_B5_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q93315-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADLKQITLK EIAEHNTNKS AWLVIGNKVF DVTKFLDEHP GGCEVLLEQA
60 70 80 90 100
GSDGTEAFED VGHSTDARHM KDEYLIGEVV ASERKTYSYD KKQWKSTTEQ
110 120 130
DNKQRGGESM QTDNIVYFAL LAVIVALVYY LIAA
Length:134
Mass (Da):15,032
Last modified:November 23, 2004 - v2
Checksum:iB5B12ADDC5112C1F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CAB01732.2.
PIRiT19614.
RefSeqiNP_510335.2. NM_077934.6.
UniGeneiCel.6554.

Genome annotation databases

EnsemblMetazoaiC31E10.7.1; C31E10.7.1; WBGene00007848.
C31E10.7.2; C31E10.7.2; WBGene00007848.
GeneIDi181510.
KEGGicel:CELE_C31E10.7.
UCSCiC31E10.7.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CAB01732.2.
PIRiT19614.
RefSeqiNP_510335.2. NM_077934.6.
UniGeneiCel.6554.

3D structure databases

ProteinModelPortaliQ93315.
SMRiQ93315. Positions 4-79.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-27359N.
MINTiMINT-1124106.
STRINGi6239.C31E10.7.2.

Proteomic databases

EPDiQ93315.
PaxDbiQ93315.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC31E10.7.1; C31E10.7.1; WBGene00007848.
C31E10.7.2; C31E10.7.2; WBGene00007848.
GeneIDi181510.
KEGGicel:CELE_C31E10.7.
UCSCiC31E10.7.1. c. elegans.

Organism-specific databases

CTDi181510.
WormBaseiC31E10.7; CE37487; WBGene00007848; cytb-5.1.

Phylogenomic databases

eggNOGiKOG0537. Eukaryota.
COG5274. LUCA.
GeneTreeiENSGT00510000046507.
HOGENOMiHOG000039853.
InParanoidiQ93315.
OMAiHSTDARH.
PhylomeDBiQ93315.

Enzyme and pathway databases

ReactomeiR-CEL-196836. Vitamin C (ascorbate) metabolism.

Family and domain databases

Gene3Di3.10.120.10. 1 hit.
InterProiIPR001199. Cyt_B5-like_heme/steroid-bd.
IPR018506. Cyt_B5_heme-BS.
[Graphical view]
PfamiPF00173. Cyt-b5. 1 hit.
[Graphical view]
PRINTSiPR00363. CYTOCHROMEB5.
SMARTiSM01117. Cyt-b5. 1 hit.
[Graphical view]
SUPFAMiSSF55856. SSF55856. 1 hit.
PROSITEiPS00191. CYTOCHROME_B5_1. 1 hit.
PS50255. CYTOCHROME_B5_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ93315_CAEEL
AccessioniPrimary (citable) accession number: Q93315
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: November 23, 2004
Last modified: June 8, 2016
This is version 124 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.