Q93139 (Q93139_BOMMO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: ORF2 EMBL BAA07467.1
Organism	Bombyx mori (Silk moth) EMBL BAA07467.1
Taxonomic identifier	7091 [NCBI]
Taxonomic lineage	Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Lepidoptera › Glossata › Ditrysia › Bombycoidea › Bombycidae › Bombycinae › Bombyx

Protein attributes

Sequence length	1162 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 reverse transcriptase domain. RuleBase RU000322

Ontologies

Keywords
Technical term	3D-structure PDB 1WDU
Gene Ontology (GO)
Biological process	RNA-dependent DNA replication Inferred from electronic annotation. Source: InterPro
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro RNA-directed DNA polymerase activity Inferred from electronic annotation. Source: InterPro ribonuclease H activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q93139 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: 4D3A1F1BBBF2F198	FASTA	1,162	132,295
	10 20 30 40 50 60 MKGFRGVRVF QSTAQGDGTV KAAIAVFDHD LDVIQYPQLT TNNIVVVGIR TRAWEITLVS 70 80 90 100 110 120 YYFEPDKPIE SYLEQIKRVE RKMGPKRLIF GGDANAKSTW WGCKEDDARG DQLMGTLGEL 130 140 150 160 170 180 GLHILNEGDV PTFDTIRGGK RYQSRVDVTF CTEDMLDLID GWRVDEDLVS SDHNGMVFNI 190 200 210 220 230 240 RLQKSKSIKI ERTTRIFNTK KANWSLFHEK MAQLLLDNNM TTLIDTIDNK TKVESAINTY 250 260 270 280 290 300 TNIITKTCEQ SIPKKTSREI LTIPWWSEKL AEMRKETNTM RRRIRNAAQD RRQHVVDEYL 310 320 330 340 350 360 KQKEKYESEV REAQAGSWKE FCGKQDREGV WEGIYRVMSR ARTREEDCPL TDVNGAPLDP 370 380 390 400 410 420 EKSAKLLAET FYPEDREEED NDEHAEIRRR AKISEGVHDE YVPSFTVNEL KHALKSFNPK 430 440 450 460 470 480 KAPGADGLTS DICTHAVDLD QKLFLGLINK CLEHRYFPKI WKAATVVILR KSGKDSYTEP 490 500 510 520 530 540 KSHRPIGLLP VLGKLYEKML VARLKYHLLP RMSTRQFGFM PQRSTEDSLY TLMQHVKEKL 550 560 570 580 590 600 KEKRIITIVS LDIEGAFDSA WWPALEVRLA EEKCPEYLRR VISSYLSDRR VSVRYAGAEY 610 620 630 640 650 660 ERATSKGCVQ GSIGGPILWN LLLDPLIHQL QARGEYIQAF ADDVVLVFDG DSALQIERQA 670 680 690 700 710 720 NTSLEHVQAW GVRNKLKFAP HKTCAMTITR RLKYDTPRLN MGGTEIATYK ELRILGLTID 730 740 750 760 770 780 DKLTFNTHVR NVCKKAIGMY KILARTARVG WGLSPEVIRV IYVAVVEPTV LYAAAVWHES 790 800 810 820 830 840 VYKLGVQKQL NVIQRGFAQK LCRAYRTVSL NSALLMAGIL PLDLRVREAA SLFEAKKGVC 850 860 870 880 890 900 QSWLGDREIE RMSSAMDAPH PAEQQSLEFG NLVDEEQYNN LNHLDVRIFT DGSKIEGRVG 910 920 930 940 950 960 AALSIWDGEV EIRSLKLALA PYCTVYQAEL LALSYAVKEA QLRNGSTFGV FSDSKAALLT 970 980 990 1000 1010 1020 VINHGSLHPL AVDIRKMLKQ CALQNKTVAL YWIKAHAGLE GNERADQLAK EAALLSKKSP 1030 1040 1050 1060 1070 1080 NYDLCPVSYV KRIIRSGSLD EWNRRYRDSD RASVTKMFFP DAVAAYSTVR KMRITGHITQ 1090 1100 1110 1120 1130 1140 FTTGHGGFSE YLARFKCKGD PSCACEPGMP ETVEHLLTSC PIFGKQRFEL ENKINKIVNK 1150 1160 ENLCKLIVEK YTKELFIVML YK

References

[1]	"Structural analysis of TRAS1, a novel family of telomeric repeat-associated retrotransposons in the silkworm, Bombyx mori." Okazaki S., Ishikawa H., Fujiwara H. Mol. Cell. Biol. 15:4545-4552(1995) [PubMed: 7623845] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Kinshu x Showa EMBL BAA07467.1. Tissue: Fatbody EMBL BAA07467.1.
[2]	"Crystal structure of the endonuclease domain encoded by the telomere-specific long interspersed nuclear element, TRAS1." Maita N., Anzai T., Aoyagi H., Mizuno H., Fujiwara H. J. Biol. Chem. 279:41067-41076(2004) [PubMed: 15247245] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 1-184.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

D38414 Genomic DNA. Translation: BAA07467.1.

PIR

T18199.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1WDU	X-ray	2.40	A/B	1-184	[»]

ProteinModelPortal

Q93139.

SMR

Q93139. Positions 4-184.

ModBase

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Protocols and materials databases

StructuralBiologyKnowledgebase

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Family and domain databases

InterPro

IPR005135. Endo/exonuclease/phosphatase.
IPR012337. RNaseH-like_dom.
IPR002156. RNaseH_domain.
IPR000477. RVT.
[Graphical view]

Pfam

PF03372. Exo_endo_phos. 1 hit.
PF00075. RNase_H. 1 hit.
PF00078. RVT_1. 1 hit.
[Graphical view]

SUPFAM

SSF56219. Exo_endo_phos. 1 hit.
SSF53098. RNaseH_fold. 1 hit.

PROSITE

PS50879. RNASE_H. 1 hit.
PS50878. RT_POL. 1 hit.
[Graphical view]

ProtoNet

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Entry information

Entry name

Q93139_BOMMO

Accession

Primary (citable) accession number: Q93139

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 1997
Last sequence update:	February 1, 1997
Last modified:	December 14, 2011
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)