Q93100 (KPBB_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 126.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Phosphorylase b kinase regulatory subunit beta Short name=Phosphorylase kinase subunit beta | ||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1093 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. The beta chain acts as a regulatory unit and modulates the activity of the holoenzyme in response to phosphorylation. |
| Enzyme regulation | By phosphorylation of various serine residues By similarity. |
| Pathway | |
| Subunit structure | Hexadecamer of 4 heterotetramers, each composed of alpha, beta, gamma, and delta subunits. Alpha (PHKA1 or PHKA2) and beta (PHKB) are regulatory subunits, gamma (PHKG1 or PHKG2) is the catalytic subunit, and delta is calmodulin. |
| Subcellular location | Cell membrane; Lipid-anchor; Cytoplasmic side Potential. |
| Post-translational modification | Ser-701 is probably phosphorylated by PKA. Although the final Cys may be farnesylated, the terminal tripeptide is probably not removed, and the C-terminus is not methylated By similarity. |
| Involvement in disease | Glycogen storage disease 9B (GSD9B) [MIM:261750]: A metabolic disorder characterized by hepatomegaly, only slightly elevated transaminases and plasma lipids, clinical improvement with increasing age, and remarkably no clinical muscle involvement. Biochemical observations suggest that this mild phenotype is caused by an incomplete holoenzyme that lacks the beta subunit, but that may possess residual activity. |
| Sequence similarities | Belongs to the phosphorylase b kinase regulatory chain family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Carbohydrate metabolism Glycogen metabolism |
| Cellular component | Cell membrane Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Disease mutation Glycogen storage disease |
| Ligand | Calmodulin-binding |
| PTM | Acetylation Lipoprotein Phosphoprotein Prenylation |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | glucose metabolic process Traceable author statement. Source: Reactome glycogen catabolic processTraceable author statement. Source: Reactome small molecule metabolic processTraceable author statement. Source: Reactome |
| Cellular_component | cytosol Traceable author statement. Source: Reactome plasma membraneInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q93100-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q93100-2) The sequence of this isoform differs from the canonical sequence as follows: 1-23: MAGAAGLTAEVSWKVLERRARTK → MACSPDAVVSPSSAFL | ||||||
| Note: Initiator Met-1 is removed. Contains a N-acetylalanine at position 2. Contains a phosphoserine at position 4. | ||||||
| Isoform 3 (identifier: Q93100-3) The sequence of this isoform differs from the canonical sequence as follows: 780-806: LAVRYGAAFTQKFSSSIAPHITTFLVH → SVVRRAASLLSKVVDSLAPSITNVLVQ | ||||||
| Isoform 4 (identifier: Q93100-4) The sequence of this isoform differs from the canonical sequence as follows: 1-23: MAGAAGLTAEVSWKVLERRARTK → MACSPDAVVSPSSAFL 780-806: LAVRYGAAFTQKFSSSIAPHITTFLVH → SVVRRAASLLSKVVDSLAPSITNVLVQ | ||||||
| Note: Initiator Met-1 is removed. Contains a N-acetylalanine at position 2. Contains a phosphoserine at position 4. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Initiator methionine | 1 | 1 | Removed By similarity | ||||||
| Chain | 2 – 1093 | 1092 | Phosphorylase b kinase regulatory subunit beta | PRO_0000057736 | |||||
Regions | |||||||||
| Region | 7 – 29 | 23 | Calmodulin-binding Potential | ||||||
| Region | 768 – 795 | 28 | Calmodulin-binding Potential | ||||||
| Region | 920 – 951 | 32 | Calmodulin-binding Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 2 | 1 | N-acetylalanine By similarity | ||||||
| Modified residue | 12 | 1 | Phosphoserine; by autocatalysis By similarity | ||||||
| Modified residue | 27 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 701 | 1 | Phosphoserine By similarity | ||||||
| Lipidation | 1090 | 1 | S-farnesyl cysteine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 23 | 23 | MAGAA…RARTK → MACSPDAVVSPSSAFL in isoform 2 and isoform 4. | VSP_012445 | |||||
| Alternative sequence | 780 – 806 | 27 | LAVRY…TFLVH → SVVRRAASLLSKVVDSLAPS ITNVLVQ in isoform 3 and isoform 4. | VSP_012446 | |||||
| Natural variant | 118 | 1 | A → P in GSD9B. Ref.10 | VAR_015536 | |||||
| Natural variant | 657 | 1 | Q → K. Ref.11 Corresponds to variant rs34667348 [ dbSNP | Ensembl ]. | VAR_020857 | |||||
| Natural variant | 770 | 1 | Y → C. Ref.9 Ref.11 Corresponds to variant rs16945474 [ dbSNP | Ensembl ]. | VAR_006187 | |||||
| Natural variant | 820 | 1 | E → V. Corresponds to variant rs9934849 [ dbSNP | Ensembl ]. | VAR_034056 | |||||
| Natural variant | 867 | 1 | L → V in a breast cancer sample; somatic mutation. Ref.12 | VAR_036486 | |||||
| Natural variant | 877 | 1 | G → R in a breast cancer sample; somatic mutation. Ref.12 | VAR_036487 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Structure of the human gene encoding the phosphorylase kinase beta subunit (PHKB)." Wuellrich-Schmoll A., Kilimann M.W. Eur. J. Biochem. 238:374-380(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], ALTERNATIVE SPLICING. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Uterus. |
| [3] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [4] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [5] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-27, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [7] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2 (ISOFORMS 2 AND 4), PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-4 (ISOFORMS 2 AND 4), MASS SPECTROMETRY, CLEAVAGE OF INITIATOR METHIONINE. Tissue: Cervix carcinoma. |
| [8] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [9] | "Autosomal recessive phosphorylase kinase deficiency in liver, caused by mutations in the gene encoding the beta subunit (PHKB)." van den Berg I.E.T., van Beurden E.A.C.M., de Klerk J.B.C., van Diggelen O.P., Malingre H.E.M., Boer M.M., Berger R. Am. J. Hum. Genet. 61:539-546(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT CYS-770. |
| [10] | "Phosphorylase-kinase-deficient liver glycogenosis with an unusual biochemical phenotype in blood cells associated with a missense mutation in the beta subunit gene (PHKB)." Burwinkel B., Moses S.W., Kilimann M.W. Hum. Genet. 101:170-174(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT GSD9B PRO-118. |
| [11] | "Muscle glycogenosis with low phosphorylase kinase activity: mutations in PHKA1, PHKG1 or six other candidate genes explain only a minority of cases." Burwinkel B., Hu B., Schroers A., Clemens P.R., Moses S.W., Shin Y.S., Pongratz D., Vorgerd M., Kilimann M.W. Eur. J. Hum. Genet. 11:516-526(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS LYS-657 AND CYS-770. |
| [12] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] VAL-867 AND ARG-877. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X84909 X84938 Genomic DNA. Translation: CAA59333.1.X84908 mRNA. Translation: CAA59332.1. BC033657 mRNA. Translation: AAH33657.1. |
| IPI | IPI00181893. IPI00218571. IPI00514085. IPI00514327. |
| PIR | S74250. S74251. |
| RefSeq | NP_000284.1. NM_000293.2. NP_001027005.1. NM_001031835.2. |
| UniGene | Hs.78060. |
3D structure databases | |
| ProteinModelPortal | Q93100. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q93100. 4 interactions. |
| MINT | MINT-1444943. |
| STRING | 9606.ENSP00000313504. |
PTM databases | |
| PhosphoSite | Q93100. |
Polymorphism databases | |
| DMDM | 2499582. |
Proteomic databases | |
| PaxDb | Q93100. |
| PRIDE | Q93100. |
Protocols and materials databases | |
| DNASU | 5257. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000299167; ENSP00000299167; ENSG00000102893. ENST00000323584; ENSP00000313504; ENSG00000102893. ENST00000455779; ENSP00000414345; ENSG00000102893. ENST00000566044; ENSP00000456729; ENSG00000102893. |
| GeneID | 5257. |
| KEGG | hsa:5257. |
| UCSC | uc002eeu.4. human. uc002eev.4. human. |
Organism-specific databases | |
| CTD | 5257. |
| GeneCards | GC16P047436. |
| HGNC | HGNC:8927. PHKB. |
| MIM | 172490. gene. 261750. phenotype. |
| neXtProt | NX_Q93100. |
| Orphanet | 79240. Glycogen storage disease due to liver and muscle phosphorylase kinase deficiency. |
| PharmGKB | PA33268. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG82518. |
| HOGENOM | HOG000231477. |
| HOVERGEN | HBG097309. |
| InParanoid | Q93100. |
| KO | K07190. |
| OMA | SNQGPLE. |
| OrthoDB | EOG44BB1G. |
| PhylomeDB | Q93100. |
Enzyme and pathway databases | |
| BioCyc | MetaCyc:HS02424-MONOMER. |
| Reactome | REACT_111217. Metabolism. |
| UniPathway | UPA00163. |
Gene expression databases | |
| ArrayExpress | Q93100. |
| Bgee | Q93100. |
| CleanEx | HS_PHKB. |
| Genevestigator | Q93100. |
Family and domain databases | |
| InterPro | IPR008928. 6-hairpin_glycosidase-like. IPR011613. Glyco_hydro_15. IPR008734. PHK_A/B_su. [Graphical view] |
| PANTHER | PTHR10749. PTHR10749. 1 hit. |
| Pfam | PF00723. Glyco_hydro_15. 1 hit. [Graphical view] |
| SUPFAM | SSF48208. Glyco_trans_6hp. 1 hit. |
| ProtoNet | Search... |
Other | |
| BindingDB | Q93100. |
| ChEMBL | CHEMBL3844. |
| ChiTaRS | PHKB. human. |
| GenomeRNAi | 5257. |
| NextBio | 20308. |
| SOURCE | Search... |
Entry information
| Entry name | KPBB_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q93100 Secondary accession number(s): Q8N4T5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with
