Reviewed, UniProtKB/Swiss-Prot Q92ZT1 (OTCC_RHIME)

Names and origin

Protein names

Recommended name:
    Ornithine carbamoyltransferase, catabolic
      Short name=OTCase
    EC=2.1.3.3

Gene names

Name:	arcB
Ordered Locus Names:	RA0368
ORF Names:	SMa0695

Encoded on

Plasmid pSymA (megaplasmid 1)

Organism

Rhizobium meliloti (Sinorhizobium meliloti) [Complete proteome] [HAMAP]

Taxonomic identifier

382 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	334 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	Carbamoyl phosphate + L-ornithine = phosphate + L-citrulline. HAMAP MF_01109
Pathway	Amino-acid degradation; L-arginine degradation via ADI pathway; carbamoyl phosphate from L-arginine: step 2/2. HAMAP MF_01109
Subcellular location	Cytoplasm Probable HAMAP MF_01109.
Sequence similarities	Belongs to the ATCase/OTCase family.

Ontologies

Keywords
Biological process	Arginine metabolism
Cellular component	Cytoplasm
Molecular function	Transferase
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	arginine metabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	ornithine carbamoyltransferase complex Inferred from electronic annotation. Source: InterPro
Molecular function	amino acid binding Inferred from electronic annotation. Source: InterPro ornithine carbamoyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 334	334	Ornithine carbamoyltransferase, catabolic HAMAP MF_01109		PRO_0000112999
Regions
	Region	57 – 61	5	Carbamoyl phosphate binding By similarity
	Region	273 – 276	4	Ornithine binding By similarity
Sites
	Binding site	108	1	Carbamoyl phosphate By similarity
	Binding site	135	1	Carbamoyl phosphate By similarity
	Site	32	1	Important for structural integrity By similarity
	Site	148	1	Important for structural integrity By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q92ZT1-1 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: BD7A703ABDB63DAE	FASTA	334	37,660
	10 20 30 40 50 60 MSFNLRNRSL LTVQDYTPRE FRYLVDLARD LKRAKYARTE QEHLKGKEIC LIFEKTSTRT 70 80 90 100 110 120 RCAFEVACSD QGANVTYLDP AGSQIGHKES FKDTARVLGR MYDAIEYRGA SQAGVETLAK 130 140 150 160 170 180 YAGVPVYNGL TDEYHPTQMI ADVMTMREHS DKPISEIKYA YIGDTRSNMG HSLLIVGCLM 190 200 210 220 230 240 GMDVRICGPR SLWPSEEYQT IAKRLKAQSG ARLMITDNPR EAVEGVDFIH TDVWVSMGEP 250 260 270 280 290 300 KEVWKERIQL LTPYQVNAEL MAASGNPQTK FMHCLPAYHD TETTIGKQIS DDYGMSDGLE 310 320 330 VTDEVFESQA NIAFEQAENR MHTIKALLVA TLGD

References

[1]

"Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid." Barnett M.J., Fisher R.F., Jones T., Komp C., Abola A.P., Barloy-Hubler F., Bowser L., Capela D., Galibert F., Gouzy J., Gurjal M., Hong A., Huizar L., Hyman R.W., Kahn D., Kahn M.L., Kalman S., Keating D.H. , Palm C., Peck M.C., Surzycki R., Wells D.H., Yeh K.-C., Davis R.W., Federspiel N.A., Long S.R. Proc. Natl. Acad. Sci. U.S.A. 98:9883-9888(2001) [PubMed: 11481432] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1021.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE006469 Genomic DNA. Translation: AAK65026.1.
PIR	H95307.
RefSeq	NP_435614.1.
3D structure databases
SMR	Q92ZT1. Positions 2-334.
ModBase	Search...
Genome annotation databases
GeneID	1235188.
GenomeReviews	Gene locus RA0368 in contig AE006469_GR.
KEGG	sme:SMa0695.
NMPDR	fig|266834.1.peg.368.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG579429.
OMA	GIEYRGY.
Enzyme and pathway databases
BioCyc	SMEL266834:SMA0695-MONOMER.
BRENDA	2.1.3.3. 142.
Family and domain databases
HAMAP	MF_01109. OTCase. [Tree]
InterPro	IPR006132. Asp/Orn_carbamoyltranf_P_bd. IPR006130. Asp/Orn_carbamoylTrfase. IPR006131. Asp_carbamoyltransf_Asp/Orn_bd. IPR002292. Orn_carbamltrans. [Graphical view]
Pfam	PF00185. OTCace. 1 hit. PF02729. OTCace_N. 1 hit. [Graphical view]
PRINTS	PR00100. AOTCASE. PR00102. OTCASE.
TIGRFAMs	TIGR00658. orni_carb_tr. 1 hit.
PROSITE	PS00097. CARBAMOYLTRANSFERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

OTCC_RHIME

Accession

Primary (citable) accession number: Q92ZT1

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 11, 2003
Last sequence update:	December 1, 2001
Last modified:	February 9, 2010
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)