Q92XF1 (Q92XF1_RHIME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase (ATP) EMBL CAC48411.1
EC=6.5.1.1 EMBL CAC48411.1

Gene names

ORF Names:

SM_b20008 EMBL CAC48411.1

Encoded on

Plasmid pSymB EMBL CAC48411.1

Organism

Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) [Complete proteome] [HAMAP] EMBL CAC48411.1

Taxonomic identifier

266834 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Rhizobium meliloti

Protein attributes

Sequence length	355 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CAC48411.1
Technical term	Complete proteome Plasmid EMBL CAC48411.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q92XF1 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: 9340619C5EFE9C56	FASTA	355	39,207
	10 20 30 40 50 60 MASSAHGKPT KKAAPSSAAK KAGGFPLPVS TAPMEARSAT ELPGGDAWQY EPKWDGFRCL 70 80 90 100 110 120 AFKSGDEVDI RAKSGKPLGR FFPEIVALLR RLEPDMFVLD GELVIEVDGR LSFDALQMRL 130 140 150 160 170 180 HPAASRVQKL SQETPAKLIL FDMLAGTDGT ILTGEPLQTR RACLEAFAKK NAVAEMLESS 190 200 210 220 230 240 PFTLDIKEAE RWLTSWEAGA TDGVVAKRRD GVYECGERAM VKVKRLKTAD CVVGGFRYES 250 260 270 280 290 300 DSSLVGSLLL GLYDTEGLLN HVGFTATISD KERPALTNQL EALREPPGFT GKAPGGPSRW 310 320 330 340 350 SSERSGEWEP VRPELVVEVR FDHVSNRRFR HGTKLMRWRP DKDPRQCTYQ QIMPS

References

[1]

"The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti." Finan T.M., Weidner S., Wong K., Buhrmester J., Chain P., Vorhoelter F.J., Hernandez-Lucas I., Becker A., Cowie A., Gouzy J., Golding B., Puehler A. Proc. Natl. Acad. Sci. U.S.A. 98:9889-9894(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1021 EMBL CAC48411.1.

[2]

"The composite genome of the legume symbiont Sinorhizobium meliloti." Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F., Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G., Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P., Cowie A. , Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S., Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I., Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S., Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C., Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R., Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H., Wong K., Yeh K.-C., Batut J. Science 293:668-672(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1021.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL591985 Genomic DNA. Translation: CAC48411.1.
PIR	C95843.
RefSeq	NP_436551.1. NC_003078.1.
3D structure databases
ProteinModelPortal	Q92XF1.
ModBase	Search...
Protein-protein interaction databases
STRING	266834.SM_b20008.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAC48411; CAC48411; SM_b20008.
GeneID	1236424.
KEGG	sme:SM_b20008.
PATRIC	23636385. VBISinMel96828_4914.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222508.
KO	K01971.
OMA	FKIKHER.
ProtClustDB	PRK08224.
Enzyme and pathway databases
BioCyc	SMEL266834:GJF6-3443-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q92XF1_RHIME

Accession

Primary (citable) accession number: Q92XF1

Entry history

Integrated into UniProtKB/TrEMBL:	December 1, 2001
Last sequence update:	December 1, 2001
Last modified:	May 1, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)