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Protein
Submitted name:

DNA ligase (ATP)

Gene

SM_b20008

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMEL266834:GJF6-3443-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:SM_b20008Imported
Encoded oniPlasmid pSymBImported
OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)Imported
Taxonomic identifieri266834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001976 Componenti: Plasmid pSymB

Structurei

3D structure databases

ProteinModelPortaliQ92XF1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Q92XF1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSAHGKPT KKAAPSSAAK KAGGFPLPVS TAPMEARSAT ELPGGDAWQY
60 70 80 90 100
EPKWDGFRCL AFKSGDEVDI RAKSGKPLGR FFPEIVALLR RLEPDMFVLD
110 120 130 140 150
GELVIEVDGR LSFDALQMRL HPAASRVQKL SQETPAKLIL FDMLAGTDGT
160 170 180 190 200
ILTGEPLQTR RACLEAFAKK NAVAEMLESS PFTLDIKEAE RWLTSWEAGA
210 220 230 240 250
TDGVVAKRRD GVYECGERAM VKVKRLKTAD CVVGGFRYES DSSLVGSLLL
260 270 280 290 300
GLYDTEGLLN HVGFTATISD KERPALTNQL EALREPPGFT GKAPGGPSRW
310 320 330 340 350
SSERSGEWEP VRPELVVEVR FDHVSNRRFR HGTKLMRWRP DKDPRQCTYQ

QIMPS
Length:355
Mass (Da):39,207
Last modified:December 1, 2001 - v1
Checksum:i9340619C5EFE9C56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591985 Genomic DNA. Translation: CAC48411.1.
PIRiC95843.
RefSeqiNP_436551.1. NC_003078.1.
WP_010974936.1. NC_003078.1.

Genome annotation databases

EnsemblBacteriaiCAC48411; CAC48411; SM_b20008.
GeneIDi1236424.
KEGGisme:SM_b20008.
PATRICi23636385. VBISinMel96828_4914.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591985 Genomic DNA. Translation: CAC48411.1.
PIRiC95843.
RefSeqiNP_436551.1. NC_003078.1.
WP_010974936.1. NC_003078.1.

3D structure databases

ProteinModelPortaliQ92XF1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC48411; CAC48411; SM_b20008.
GeneIDi1236424.
KEGGisme:SM_b20008.
PATRICi23636385. VBISinMel96828_4914.

Phylogenomic databases

HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciSMEL266834:GJF6-3443-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti."
    Finan T.M., Weidner S., Wong K., Buhrmester J., Chain P., Vorholter F.J., Hernandez-Lucas I., Becker A., Cowie A., Gouzy J., Golding B., Puhler A.
    Proc. Natl. Acad. Sci. U.S.A. 98:9889-9894(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1021Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1021Imported.

Entry informationi

Entry nameiQ92XF1_RHIME
AccessioniPrimary (citable) accession number: Q92XF1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: July 22, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.