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Q92XF1

- Q92XF1_RHIME

UniProt

Q92XF1 - Q92XF1_RHIME

Protein
Submitted name:

DNA ligase (ATP)

Gene

SM_b20008

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (01 Dec 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMEL266834:GJF6-3443-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
    Gene namesi
    ORF Names:SM_b20008Imported
    Encoded oniPlasmid pSymBImported
    OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)Imported
    Taxonomic identifieri266834 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001976: Plasmid pSymB

    Interactioni

    Protein-protein interaction databases

    STRINGi266834.SM_b20008.

    Structurei

    3D structure databases

    ProteinModelPortaliQ92XF1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222508.
    KOiK01971.
    OMAiHERTADC.
    OrthoDBiEOG63NMFT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q92XF1-1 [UniParc]FASTAAdd to Basket

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    MASSAHGKPT KKAAPSSAAK KAGGFPLPVS TAPMEARSAT ELPGGDAWQY    50
    EPKWDGFRCL AFKSGDEVDI RAKSGKPLGR FFPEIVALLR RLEPDMFVLD 100
    GELVIEVDGR LSFDALQMRL HPAASRVQKL SQETPAKLIL FDMLAGTDGT 150
    ILTGEPLQTR RACLEAFAKK NAVAEMLESS PFTLDIKEAE RWLTSWEAGA 200
    TDGVVAKRRD GVYECGERAM VKVKRLKTAD CVVGGFRYES DSSLVGSLLL 250
    GLYDTEGLLN HVGFTATISD KERPALTNQL EALREPPGFT GKAPGGPSRW 300
    SSERSGEWEP VRPELVVEVR FDHVSNRRFR HGTKLMRWRP DKDPRQCTYQ 350
    QIMPS 355
    Length:355
    Mass (Da):39,207
    Last modified:December 1, 2001 - v1
    Checksum:i9340619C5EFE9C56
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL591985 Genomic DNA. Translation: CAC48411.1.
    PIRiC95843.
    RefSeqiNP_436551.1. NC_003078.1.

    Genome annotation databases

    EnsemblBacteriaiCAC48411; CAC48411; SM_b20008.
    GeneIDi1236424.
    KEGGisme:SM_b20008.
    PATRICi23636385. VBISinMel96828_4914.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL591985 Genomic DNA. Translation: CAC48411.1 .
    PIRi C95843.
    RefSeqi NP_436551.1. NC_003078.1.

    3D structure databases

    ProteinModelPortali Q92XF1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 266834.SM_b20008.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAC48411 ; CAC48411 ; SM_b20008 .
    GeneIDi 1236424.
    KEGGi sme:SM_b20008.
    PATRICi 23636385. VBISinMel96828_4914.

    Phylogenomic databases

    HOGENOMi HOG000222508.
    KOi K01971.
    OMAi HERTADC.
    OrthoDBi EOG63NMFT.

    Enzyme and pathway databases

    BioCyci SMEL266834:GJF6-3443-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti."
      Finan T.M., Weidner S., Wong K., Buhrmester J., Chain P., Vorhoelter F.J., Hernandez-Lucas I., Becker A., Cowie A., Gouzy J., Golding B., Puehler A.
      Proc. Natl. Acad. Sci. U.S.A. 98:9889-9894(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 1021Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 1021Imported.

    Entry informationi

    Entry nameiQ92XF1_RHIME
    AccessioniPrimary (citable) accession number: Q92XF1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 1, 2001
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3