Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Probable ATP-dependent DNA ligase

Gene

SMc03959

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMEL266834:GJF6-2809-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:SMc03959Imported
OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)Imported
Taxonomic identifieri266834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001976 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi266834.SMc03959.

Structurei

3D structure databases

ProteinModelPortaliQ92M95.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q92M95-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARNEPLSE YNRRRDFTRT SEPKGAVARR SGDNRMRFLV QKHAATRLHY
60 70 80 90 100
DFRLEWEGVL KSWAVTRGPS LNPEDKRLAV RTEDHPLAYG DFEGTIPKGE
110 120 130 140 150
YGGGTVMLWD TGWWEPEDDP SKALKKGKLS FKLHGSRMKG GWALVRMRPR
160 170 180 190 200
EGEKRENWLL VKETDDVASD DGESLINENI TSIVTGRTME EIAEGRGEKR
210 220 230 240 250
ARVWHSNKSI SANLKAGAIA ENGNAGKRAT RKASGKLPAF KAPQLATLVT
260 270 280 290 300
KVPAGDAWLN EAKFDGYRLV CAVGAGTVRC YTRNGLDWTE KFPAIAAALA
310 320 330 340 350
ELDCQSALID GEVVALSEGG STFSALQKAL RTGASTRLYA FDLIELDGKD
360 370 380 390 400
LSRKPLVERK ERLEALLQTL GATSTVQFSE HVRGNGEHVL SAICKAGQEG
410 420 430 440 450
IIAKEADAPY RSGRSRSWLK VKCTKRQEFV IGGYTPSSKK GRAFASLLVG
460 470 480 490 500
TFEGGKLIYR GGVGTGFSGK TMEDLAAAFA KRKRDTSPFD SVPRERMRNS
510 520 530 540 550
VWLEPDLVAE VDFAEFTADG HVRHGSFEGL REDKEARAVK LETPKPAEAE
560 570 580 590 600
PETAKSKSSA RTRKTPPVQG DADVLGIRIS HPDRVLFEGQ GITKIDLARY
610 620 630 640 650
YAVVAERMLP FAADHPVSLV RCPQGGERHC FFQKHASDGF PEAIREVPIT
660 670 680 690 700
ESSGDTENYM YIHDAKGLVA AVQMGTLEFH IWGSSIDRLE KPDRLVFDLD
710 720 730 740 750
PDPSVDFETV KAAALRLRDE LAEIGLKTVP MVTGGKGVHV IVPLRPHAEW
760 770 780 790 800
EEAKGFAKAL ARSIAERDPD NFVATMSKAK RKGKIFIDWL RNDRGATAIA
810 820 830 840 850
PYSTRARSGG PVATPVGWDE LQGLEAANGF QIPDIIERIE AGTDPWREIG
860
KISQSLTKKI LNSVE
Length:865
Mass (Da):95,261
Last modified:December 1, 2001 - v1
Checksum:iA1F873AAB0EEAE40
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591688 Genomic DNA. Translation: CAC47322.1.
RefSeqiNP_386849.1. NC_003047.1.
WP_010970164.1. NC_003047.1.

Genome annotation databases

EnsemblBacteriaiCAC47322; CAC47322; SMc03959.
GeneIDi1234419.
KEGGisme:SMc03959.
PATRICi23635043. VBISinMel96828_4252.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591688 Genomic DNA. Translation: CAC47322.1.
RefSeqiNP_386849.1. NC_003047.1.
WP_010970164.1. NC_003047.1.

3D structure databases

ProteinModelPortaliQ92M95.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266834.SMc03959.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC47322; CAC47322; SMc03959.
GeneIDi1234419.
KEGGisme:SMc03959.
PATRICi23635043. VBISinMel96828_4252.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSMEL266834:GJF6-2809-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1021Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1021Imported.

Entry informationi

Entry nameiQ92M95_RHIME
AccessioniPrimary (citable) accession number: Q92M95
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: July 22, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.