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Protein
Submitted name:

Putative transcription regulator

Gene

SMc03896

Organism
Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi140 – 159H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Enzyme and pathway databases

BioCyciSMEL266834:GJF6-3367-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcription regulatorImported
Gene namesi
ORF Names:SMc03896Imported
OrganismiRhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)Imported
Taxonomic identifieri266834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001976 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  • protein-DNA complex Source: CollecTF

Expressioni

Gene expression databases

CollecTFiEXPREG_00001440.

Interactioni

Protein-protein interaction databases

STRINGi266834.SMc03896.

Structurei

3D structure databases

ProteinModelPortaliQ92L12.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini116 – 181HTH luxR-typeInterPro annotationAdd BLAST66

Phylogenomic databases

eggNOGiENOG4108R8P. Bacteria.
ENOG4111FND. LUCA.
HOGENOMiHOG000295724.
KOiK07782.
OMAiNHTVDWY.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF03472. Autoind_bind. 1 hit.
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiView protein in PROSITE
PS50043. HTH_LUXR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q92L12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGATPIRKKY VVIDPTIRFL GHAQRGFRWR DTLVAFRSDP HRKRMESMMV
60 70 80 90 100
EARNHGLFDG YIFPVHGRRG LMGNLTVGGR VVDLSPVELS LFDAIAKRLF
110 120 130 140 150
WKLLELTDPE IMAELVSRVE VQMTRREMEA LHYLADGMTS NDIGKVLDIS
160 170 180
SHTVDWYMNG IQEKLKAKNR HHVVAIAFRL GLIS
Length:184
Mass (Da):21,101
Last modified:December 1, 2001 - v1
Checksum:i0AA276FE7CC981CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591688 Genomic DNA. Translation: CAC47858.1.
RefSeqiNP_387385.1. NC_003047.1.
WP_010970539.1. NC_003047.1.

Genome annotation databases

EnsemblBacteriaiCAC47858; CAC47858; SMc03896.
GeneIDi1234973.
KEGGisme:SMc03896.
PATRICifig|266834.11.peg.4838.

Similar proteinsi

Entry informationi

Entry nameiQ92L12_RHIME
AccessioniPrimary (citable) accession number: Q92L12
Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: September 27, 2017
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported