Reviewed, UniProtKB/Swiss-Prot Q92JN5 (RECF_RICCN)

Names and origin

Protein names

Recommended name:
    DNA replication and repair protein recF

Gene names

Name:	recF
Ordered Locus Names:	RC0032

Organism

Rickettsia conorii [Complete proteome] [HAMAP]

Taxonomic identifier

781 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › spotted fever group

Protein attributes

Sequence length	360 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the recF family.

Ontologies

Keywords
Biological process	DNA damage DNA repair DNA replication SOS response
Cellular component	Cytoplasm
Ligand	ATP-binding DNA-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA repair Inferred from electronic annotation. Source: HAMAP DNA replication Inferred from electronic annotation. Source: HAMAP SOS response Inferred from electronic annotation. Source: HAMAP
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP single-stranded DNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 360	360	DNA replication and repair protein recF HAMAP MF_00365		PRO_0000196449
Regions
	Nucleotide binding	33 – 40	8	ATP Potential

Sequences

	Sequence		Length	Mass (Da)
	Q92JN5-1 [UniParc]. Last modified December 1, 2001. Version 1. Checksum: 96082C390287B9C6	FASTA	360	41,527
	10 20 30 40 50 60 MKNIFLHSLN LENYRNFKNL ELKTDNTPII LIGENGSGKT NILEAISLFY PGRGLRSAKL 70 80 90 100 110 120 ANVCKTSEDH CLVKALLQSK LGLAEFTTQF KRSSNRRITE YNESKIANNE LSKFTSMVWL 130 140 150 160 170 180 TPHMEGIFTS GSSDRRKFLD RIVYNFDPKH AELVSKYEYY MHERNKILVE DRRDDNWLKI 190 200 210 220 230 240 IEEKMADISN HIANNRLKTL EFMQQAIDDL ENEFPKADLS IDGIVEQKIL NGKKNIVSFI 250 260 270 280 290 300 TAELYQTRSK DKLLGRTSFG VHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEMNYA 310 320 330 340 350 360 IKLTKIAPIL LLDEVFVHLD DKRRQYLIEF LTGLNMQLWV TTTNLEGIDN FATKAQLIKL

References

[1]

"Mechanisms of evolution in Rickettsia conorii and R. prowazekii." Ogata H., Audic S., Renesto-Audiffren P., Fournier P.-E., Barbe V., Samson D., Roux V., Cossart P., Weissenbach J., Claverie J.-M., Raoult D. Science 293:2093-2098(2001) [PubMed: 11557893] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC VR-613 / Malish 7.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE006914 Genomic DNA. Translation: AAL02570.1.
PIR	H97703.
RefSeq	NP_359669.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	928627.
GenomeReviews	Gene locus RC0032 in contig AE006914_GR.
KEGG	rco:RC0032.
NMPDR	fig|272944.1.peg.32.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q92JN5.
OMA	NAQGKSN
Enzyme and pathway databases
BioCyc	RCON272944:RC0032-MON.
Family and domain databases
HAMAP	MF_00365. [Tree]
InterPro	IPR001238. DNA-binding_RecF. IPR018078. DNA-binding_RecF_CS. IPR003395. RecF/RecN/SMC_N. [Graphical view]
Pfam	PF02463. SMC_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR00611. recf. 1 hit.
PROSITE	PS00617. RECF_1. 1 hit. PS00618. RECF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RECF_RICCN

Accession

Primary (citable) accession number: Q92JN5

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 15, 2002
Last sequence update:	December 1, 2001
Last modified:	November 24, 2009
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)