SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q92IC9

- XERD_RICCN

UniProt

Q92IC9 - XERD_RICCN

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Tyrosine recombinase XerD

Gene
xerD, RC0491
Organism
Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei145 – 1451 By similarity
Active sitei176 – 1761 By similarity
Active sitei251 – 2511 By similarity
Active sitei254 – 2541 By similarity
Active sitei277 – 2771 By similarity
Active sitei286 – 2861O-(3'-phospho-DNA)-tyrosine intermediate By similarity

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. tyrosine-based site-specific recombinase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. cell cycle Source: UniProtKB-KW
  2. cell division Source: UniProtKB-KW
  3. chromosome segregation Source: UniProtKB-HAMAP
  4. transposition, DNA-mediated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

Cell cycle, Cell division, Chromosome partition, DNA integration, DNA recombination

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Tyrosine recombinase XerD
Gene namesi
Name:xerD
Ordered Locus Names:RC0491
OrganismiRickettsia conorii (strain ATCC VR-613 / Malish 7)
Taxonomic identifieri272944 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000000816: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 306306Tyrosine recombinase XerDUniRule annotationPRO_0000095410Add
BLAST

Interactioni

Subunit structurei

Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD By similarity.

Protein-protein interaction databases

STRINGi272944.RC0491.

Structurei

3D structure databases

ProteinModelPortaliQ92IC9.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG4974.
HOGENOMiHOG000045296.
KOiK04763.
OMAiPMGELAI.
OrthoDBiEOG6PZXFP.

Family and domain databases

Gene3Di1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPiMF_01807. Recomb_XerD.
MF_01808. Recomb_XerC.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
[Graphical view]
PfamiPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

Q92IC9-1 [UniParc]FASTAAdd to Basket

« Hide

MGFIAQFLEM LLAERALSKN SILSYKRDLF DFQNYLAKHK LSELNITTEN    50
IRDWIEYLAS NDLQARSINR KISTIKSYYE FLISENHTAF NPVLNVDLPK 100
YQNKLPEILS IAQIKSLLEH CSQDNSPEGI RLNAMIHLLY ASGLRVSELV 150
SLKLADILTN KTSKGEVRKI FSVLGKGNKE RVIVINEQAV ISIAKYLTIR 200
GVFVNKAKPR NLIYLFPSSA LAGYMTRQNF AILLKSAALY AGLNPEYISP 250
HILRHSFASH LLEGGADLRV IQELLGHADI STTQIYTHLQ TNHLKKALLR 300
HPLNKN 306
Length:306
Mass (Da):34,699
Last modified:December 1, 2001 - v1
Checksum:i734AA7CCECA351AC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE006914 Genomic DNA. Translation: AAL03029.1.
PIRiC97761.
RefSeqiNP_360128.1. NC_003103.1.

Genome annotation databases

EnsemblBacteriaiAAL03029; AAL03029; RC0491.
GeneIDi927615.
KEGGirco:RC0491.
PATRICi17888218. VBIRicCon45613_0562.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE006914 Genomic DNA. Translation: AAL03029.1 .
PIRi C97761.
RefSeqi NP_360128.1. NC_003103.1.

3D structure databases

ProteinModelPortali Q92IC9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272944.RC0491.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAL03029 ; AAL03029 ; RC0491 .
GeneIDi 927615.
KEGGi rco:RC0491.
PATRICi 17888218. VBIRicCon45613_0562.

Phylogenomic databases

eggNOGi COG4974.
HOGENOMi HOG000045296.
KOi K04763.
OMAi PMGELAI.
OrthoDBi EOG6PZXFP.

Family and domain databases

Gene3Di 1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPi MF_01807. Recomb_XerD.
MF_01808. Recomb_XerC.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
[Graphical view ]
Pfami PF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-613 / Malish 7.

Entry informationi

Entry nameiXERD_RICCN
AccessioniPrimary (citable) accession number: Q92IC9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 22, 2003
Last sequence update: December 1, 2001
Last modified: May 14, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia conorii
    (strain Malish 7): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi