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Protein

Uncharacterized HTH-type transcriptional regulator RC0668

Gene

RC0668

Organism
Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi30 – 49H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciRCON272944:G13CP-682-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator RC0668
Gene namesi
Ordered Locus Names:RC0668
OrganismiRickettsia conorii (strain ATCC VR-613 / Malish 7)
Taxonomic identifieri272944 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
Proteomesi
  • UP000000816 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001497801 – 125Uncharacterized HTH-type transcriptional regulator RC0668Add BLAST125

Structurei

3D structure databases

ProteinModelPortaliQ92HV3.
SMRiQ92HV3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini19 – 73HTH cro/C1-typePROSITE-ProRule annotationAdd BLAST55

Phylogenomic databases

HOGENOMiHOG000231469.
OMAiEMEEHKD.
OrthoDBiPOG091H054U.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiView protein in InterPro
IPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
PfamiView protein in Pfam
PF01381. HTH_3. 1 hit.
SMARTiView protein in SMART
SM00530. HTH_XRE. 1 hit.
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiView protein in PROSITE
PS50943. HTH_CROC1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q92HV3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRKNDIIQK IDSFIGKKIY SLRLAKGLSR QQLAEVIDVT HQQLQKYEKA
60 70 80 90 100
INRISVGRLV LIAEALDRNI DYFFEGLEEA NKPQPVHTQH QRMCIEVSRN
110 120
FMKINSTEEQ QAVNNLVKCL AGKKN
Length:125
Mass (Da):14,396
Last modified:December 1, 2001 - v1
Checksum:i77BC848D526DC03F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006914 Genomic DNA. Translation: AAL03206.1.
PIRiD97783.
RefSeqiWP_010977292.1. NC_003103.1.

Genome annotation databases

EnsemblBacteriaiAAL03206; AAL03206; RC0668.
GeneIDi927847.
KEGGirco:RC0668.
PATRICi17888624. VBIRicCon45613_0761.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006914 Genomic DNA. Translation: AAL03206.1.
PIRiD97783.
RefSeqiWP_010977292.1. NC_003103.1.

3D structure databases

ProteinModelPortaliQ92HV3.
SMRiQ92HV3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL03206; AAL03206; RC0668.
GeneIDi927847.
KEGGirco:RC0668.
PATRICi17888624. VBIRicCon45613_0761.

Phylogenomic databases

HOGENOMiHOG000231469.
OMAiEMEEHKD.
OrthoDBiPOG091H054U.

Enzyme and pathway databases

BioCyciRCON272944:G13CP-682-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiView protein in InterPro
IPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
PfamiView protein in Pfam
PF01381. HTH_3. 1 hit.
SMARTiView protein in SMART
SM00530. HTH_XRE. 1 hit.
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiView protein in PROSITE
PS50943. HTH_CROC1. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY668_RICCN
AccessioniPrimary (citable) accession number: Q92HV3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 21, 2003
Last sequence update: December 1, 2001
Last modified: March 15, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia conorii
    (strain Malish 7): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.