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Protein
Submitted name:

GlpF protein

Gene

glpF

Organism
Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
GlpF proteinImported
Gene namesi
Name:glpFImported
OrganismiListeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)Imported
Taxonomic identifieri272626 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
Proteomesi
  • UP000002513 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 27HelicalSequence analysisAdd BLAST22
Transmembranei34 – 55HelicalSequence analysisAdd BLAST22
Transmembranei86 – 105HelicalSequence analysisAdd BLAST20
Transmembranei132 – 151HelicalSequence analysisAdd BLAST20
Transmembranei163 – 184HelicalSequence analysisAdd BLAST22
Transmembranei211 – 233HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi272626.lin1131.

Structurei

3D structure databases

ProteinModelPortaliQ92CP0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the MIP/aquaporin (TC 1.A.8) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105D8C. Bacteria.
COG0580. LUCA.
HOGENOMiHOG000288285.
KOiK02440.
OMAiYLGAIIY.
OrthoDBiPOG091H00B1.

Family and domain databases

Gene3Di1.20.1080.10. 1 hit.
InterProiIPR023271. Aquaporin-like.
IPR000425. MIP.
IPR022357. MIP_CS.
[Graphical view]
PANTHERiPTHR19139. PTHR19139. 1 hit.
PfamiPF00230. MIP. 1 hit.
[Graphical view]
PRINTSiPR00783. MINTRINSICP.
SUPFAMiSSF81338. SSF81338. 1 hit.
TIGRFAMsiTIGR00861. MIP. 1 hit.
PROSITEiPS00221. MIP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q92CP0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAYLAEFIG TMVLIMFGNG LLAGLTLNKS LSQGANWVVV TFGWGFAVMI
60 70 80 90 100
GIYVAGAYSG AHLNPAVTIA LAVGGSFSWA AVVPYIIAQI AGAFVGASII
110 120 130 140 150
ILHYYPHFKA TPQEIDTHGI FSTGPAIRNT PFNLISEIIA TFAFIFGLLM
160 170 180 190 200
IGENSFTNGL NPLILGFLVV AIGMSFGPTT GYAINPARDL GPRLAYFLLP
210 220 230
VPNKSGSDWR YAWIPIVGPI IGGLLAIGLF NILL
Length:234
Mass (Da):24,756
Last modified:December 1, 2001 - v1
Checksum:iD8A11459EB68A217
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596167 Genomic DNA. Translation: CAC96362.1.
PIRiAB1574.
RefSeqiWP_010990789.1. NC_003212.1.

Genome annotation databases

EnsemblBacteriaiCAC96362; CAC96362; CAC96362.
KEGGilin:glpF.
PATRICi20298981. VBILisInn102668_1158.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596167 Genomic DNA. Translation: CAC96362.1.
PIRiAB1574.
RefSeqiWP_010990789.1. NC_003212.1.

3D structure databases

ProteinModelPortaliQ92CP0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272626.lin1131.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC96362; CAC96362; CAC96362.
KEGGilin:glpF.
PATRICi20298981. VBILisInn102668_1158.

Phylogenomic databases

eggNOGiENOG4105D8C. Bacteria.
COG0580. LUCA.
HOGENOMiHOG000288285.
KOiK02440.
OMAiYLGAIIY.
OrthoDBiPOG091H00B1.

Family and domain databases

Gene3Di1.20.1080.10. 1 hit.
InterProiIPR023271. Aquaporin-like.
IPR000425. MIP.
IPR022357. MIP_CS.
[Graphical view]
PANTHERiPTHR19139. PTHR19139. 1 hit.
PfamiPF00230. MIP. 1 hit.
[Graphical view]
PRINTSiPR00783. MINTRINSICP.
SUPFAMiSSF81338. SSF81338. 1 hit.
TIGRFAMsiTIGR00861. MIP. 1 hit.
PROSITEiPS00221. MIP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ92CP0_LISIN
AccessioniPrimary (citable) accession number: Q92CP0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: September 7, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.