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Protein

Cobalt-precorrin-5B C(1)-methyltransferase

Gene

cbiD

Organism
Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.UniRule annotation

Catalytic activityi

Cobalt-precorrin-5B + S-adenosyl-L-methionine = cobalt-precorrin-6A + S-adenosyl-L-homocysteine.UniRule annotation

Pathwayi: adenosylcobalamin biosynthesis

This protein is involved in step 6 of the subpathway that synthesizes cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route).UniRule annotation
Proteins known to be involved in the 10 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. no protein annotated in this organism
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
  6. Cobalt-precorrin-5B C(1)-methyltransferase (cbiD)
  7. no protein annotated in this organism
  8. no protein annotated in this organism
  9. no protein annotated in this organism
  10. Cobyrinate a,c-diamide synthase (cbiA)
This subpathway is part of the pathway adenosylcobalamin biosynthesis, which is itself part of Cofactor biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route), the pathway adenosylcobalamin biosynthesis and in Cofactor biosynthesis.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionMethyltransferase, Transferase
Biological processCobalamin biosynthesis
LigandS-adenosyl-L-methionine

Enzyme and pathway databases

UniPathwayiUPA00148; UER00227

Names & Taxonomyi

Protein namesi
Recommended name:
Cobalt-precorrin-5B C(1)-methyltransferaseUniRule annotation (EC:2.1.1.195UniRule annotation)
Alternative name(s):
Cobalt-precorrin-6A synthaseUniRule annotation
Gene namesi
Name:cbiDUniRule annotation
Ordered Locus Names:lin1157
OrganismiListeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Taxonomic identifieri272626 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
Proteomesi
  • UP000002513 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001416701 – 373Cobalt-precorrin-5B C(1)-methyltransferaseAdd BLAST373

Interactioni

Protein-protein interaction databases

STRINGi272626.lin1157

Structurei

3D structure databases

ProteinModelPortaliQ92CL4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CbiD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105EE8 Bacteria
COG1903 LUCA
HOGENOMiHOG000009126
KOiK02188
OMAiGGIFHTH
OrthoDBiPOG091H02QJ

Family and domain databases

Gene3Di3.30.2110.10, 1 hit
HAMAPiMF_00787 CbiD, 1 hit
InterProiView protein in InterPro
IPR002748 CbiD
IPR036074 CbiD_sf
PANTHERiPTHR35863 PTHR35863, 1 hit
PfamiView protein in Pfam
PF01888 CbiD, 1 hit
PIRSFiPIRSF026782 CbiD, 1 hit
SUPFAMiSSF111342 SSF111342, 1 hit
TIGRFAMsiTIGR00312 cbiD, 1 hit

Sequencei

Sequence statusi: Complete.

Q92CL4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDFIYYNGK KYRKGYTTGT CAAAAAKACV EMIENQEEVS AVKVTTTGGT
60 70 80 90 100
ILEIPVAYQQ FSEKKATAAV QKDGGDDIDA THGMWIFVDV ELTDSPEVTL
110 120 130 140 150
DGGVGIGRAT QKGISVEVGE AAINPAPRKN ILATVRESLG ENRGATILVY
160 170 180 190 200
APEGEERAKR TMNSNLGIIG GISILGTTGI VTPMSDEGWK KSLSMELEMK
210 220 230 240 250
RNQGLDQIIL VPGNYGDDFV QNTLGFASDN IVSMSNFVGY MLKETQRLAF
260 270 280 290 300
KKVLMVGHFG KLVKVSAGIF TTYSKDADAR AEILVANLAL LGAPLSLLQE
310 320 330 340 350
VEKCNTTEAA GELIEAAGFT QVYEVIAQKI KARSERFLKF TKPSVEIDVV
360 370
TFSTERGLLA ATKDIEVLRE EWR
Length:373
Mass (Da):40,429
Last modified:December 1, 2001 - v1
Checksum:i46557229EEC5EF53
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596167 Genomic DNA Translation: CAC96388.1
PIRiAD1577
RefSeqiWP_010990801.1, NC_003212.1

Genome annotation databases

EnsemblBacteriaiCAC96388; CAC96388; CAC96388
KEGGilin:cbiD

Similar proteinsi

Entry informationi

Entry nameiCBID_LISIN
AccessioniPrimary (citable) accession number: Q92CL4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: December 1, 2001
Last modified: March 28, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health