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Protein
Submitted name:

Lin1550 protein

Gene

lin1550

Organism
Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Lin1550 proteinImported
Gene namesi
Ordered Locus Names:lin1550Imported
OrganismiListeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)Imported
Taxonomic identifieri272626 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
Proteomesi
  • UP000002513 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272626.lin1550.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LWFX-ray2.06A/B/C/D1-140[»]
ProteinModelPortaliQ92BJ8.
SMRiQ92BJ8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ92BJ8.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108ZF1. Bacteria.
COG1959. LUCA.
HOGENOMiHOG000249817.
KOiK17472.
OMAiYAVRAMI.
OrthoDBiPOG091H02NF.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR030489. TR_Rrf2-type_CS.
IPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
TIGRFAMsiTIGR00738. rrf2_super. 1 hit.
PROSITEiPS01332. HTH_RRF2_1. 1 hit.
PS51197. HTH_RRF2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q92BJ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKITTKGRYG LTITLELAKR IGDGPISLRS IAQDKNLSEH YLEQLIGPLR
60 70 80 90 100
NAGIVKSIRG AHGGYVLNGD PEKITAGDII RTLEGPIVLV ESMEDEEAAQ
110 120 130 140
RELWTRMRNA VRDVLDQTTL SDLLKHSTDS ELTDGYMFYI
Length:140
Mass (Da):15,600
Last modified:December 1, 2001 - v1
Checksum:i6123ED5578F5116D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596169 Genomic DNA. Translation: CAC96781.1.
PIRiAE1626.
RefSeqiWP_010991589.1. NC_003212.1.

Genome annotation databases

EnsemblBacteriaiCAC96781; CAC96781; CAC96781.
KEGGilin:lin1550.
PATRICi20299837. VBILisInn102668_1585.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596169 Genomic DNA. Translation: CAC96781.1.
PIRiAE1626.
RefSeqiWP_010991589.1. NC_003212.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LWFX-ray2.06A/B/C/D1-140[»]
ProteinModelPortaliQ92BJ8.
SMRiQ92BJ8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272626.lin1550.

Protocols and materials databases

DNASUi1130165.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC96781; CAC96781; CAC96781.
KEGGilin:lin1550.
PATRICi20299837. VBILisInn102668_1585.

Phylogenomic databases

eggNOGiENOG4108ZF1. Bacteria.
COG1959. LUCA.
HOGENOMiHOG000249817.
KOiK17472.
OMAiYAVRAMI.
OrthoDBiPOG091H02NF.

Miscellaneous databases

EvolutionaryTraceiQ92BJ8.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR030489. TR_Rrf2-type_CS.
IPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
TIGRFAMsiTIGR00738. rrf2_super. 1 hit.
PROSITEiPS01332. HTH_RRF2_1. 1 hit.
PS51197. HTH_RRF2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ92BJ8_LISIN
AccessioniPrimary (citable) accession number: Q92BJ8
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: November 2, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.