Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q92A54 (DEOB_LISIN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phosphopentomutase

EC=5.4.2.7
Alternative name(s):
Phosphodeoxyribomutase
Gene names
Name:deoB
Synonyms:drm
Ordered Locus Names:lin2068
OrganismListeria innocua serovar 6a (strain CLIP 11262) [Complete proteome] [HAMAP]
Taxonomic identifier272626 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria

Protein attributes

Sequence length394 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740

Catalytic activity

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740

Cofactor

Binds 1 or 2 manganese ions Potential.

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740.

Sequence similarities

Belongs to the phosphopentomutase family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 394394Phosphopentomutase HAMAP-Rule MF_00740
PRO_0000199827

Sites

Metal binding141Manganese By similarity
Metal binding2921Manganese By similarity
Metal binding3281Manganese By similarity
Metal binding3291Manganese By similarity
Metal binding3401Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
Q92A54 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 7075AA0546BCC40C

FASTA39443,747
        10         20         30         40         50         60 
MPDKFKRVHV IVMDSVGIGE APDAAKFGDF DVDTFGHIAK HVGGLKMPEM GKLGLSNIRE 

        70         80         90        100        110        120 
IEGIEKAEKP LAYYTKMQEA SNGKDTMTGH WEIMGLYIDT PFRVFPDGFP DDLINQIEAK 

       130        140        150        160        170        180 
TGRKVIGNKP ASGTEIMAEL GEEHVKTGAL IVYTSADSVL QIAAHEDVVP LEELYEICEF 

       190        200        210        220        230        240 
CREITLDDPY MLGRIIARPF VGEPGAFVRT PNRHDYALKP FKPTVMDALK DGGKDVIAIG 

       250        260        270        280        290        300 
KISDIFDGEG VTESIRTKSN MDGMDQFIDV LDKDFNGMSF LNLVDFDALF GHRRDPQGYA 

       310        320        330        340        350        360 
DALVDFDGRL VEVMEKLTDD DLLIITADHG NDPTYTGTDH TREFVPLLVY SPRFKNGGSE 

       370        380        390 
LELRQTFADL GATVADNFDV KMPEYGKSFL KDLK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL596170 Genomic DNA. Translation: CAC97298.1.
PIRAB1691.
RefSeqNP_471402.1. NC_003212.1.

3D structure databases

ProteinModelPortalQ92A54.
SMRQ92A54. Positions 3-393.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272626.lin2068.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAC97298; CAC97298; CAC97298.
GeneID1130782.
KEGGlin:lin2068.
PATRIC20300951. VBILisInn102668_2114.

Organism-specific databases

GenoListLIN2068.
CMRSearch...

Phylogenomic databases

eggNOGCOG1015.
HOGENOMHOG000008159.
KOK01839.
OMAEHTREHI.
OrthoDBEOG6R5C7J.

Enzyme and pathway databases

UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOB_LISIN
AccessionPrimary (citable) accession number: Q92A54
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2003
Last sequence update: December 1, 2001
Last modified: May 14, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways