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Q92952

- KCNN1_HUMAN

UniProt

Q92952 - KCNN1_HUMAN

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Protein
Small conductance calcium-activated potassium channel protein 1
Gene
KCNN1, SK
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin By similarity.

GO - Molecular functioni

  1. calcium-activated potassium channel activity Source: ProtInc
  2. calmodulin binding Source: RefGenome
  3. small conductance calcium-activated potassium channel activity Source: RefGenome

GO - Biological processi

  1. potassium ion transmembrane transport Source: RefGenome
  2. potassium ion transport Source: ProtInc
  3. synaptic transmission Source: Reactome
Complete GO annotation...

Keywords - Molecular functioni

Ion channel

Keywords - Biological processi

Ion transport, Transport

Keywords - Ligandi

Calmodulin-binding

Enzyme and pathway databases

ReactomeiREACT_75896. Ca2+ activated K+ channels.

Names & Taxonomyi

Protein namesi
Recommended name:
Small conductance calcium-activated potassium channel protein 1
Short name:
SK1
Short name:
SKCa 1
Short name:
SKCa1
Alternative name(s):
KCa2.1
Gene namesi
Name:KCNN1
Synonyms:SK
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 19

Organism-specific databases

HGNCiHGNC:6290. KCNN1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei111 – 13121Helical; Name=Segment S1; Reviewed prediction
Add
BLAST
Transmembranei140 – 16021Helical; Name=Segment S2; Reviewed prediction
Add
BLAST
Transmembranei179 – 19921Helical; Name=Segment S3; Reviewed prediction
Add
BLAST
Transmembranei228 – 24821Helical; Name=Segment S4; Reviewed prediction
Add
BLAST
Transmembranei277 – 29721Helical; Name=Segment S5; Reviewed prediction
Add
BLAST
Intramembranei317 – 33721Pore-forming; Name=Segment H5; Reviewed prediction
Add
BLAST
Transmembranei346 – 36621Helical; Name=Segment S6; Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. neuronal cell body Source: RefGenome
  3. plasma membrane Source: RefGenome
  4. voltage-gated potassium channel complex Source: ProtInc
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA30070.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 543543Small conductance calcium-activated potassium channel protein 1
PRO_0000155007Add
BLAST

Proteomic databases

PaxDbiQ92952.
PRIDEiQ92952.

PTM databases

PhosphoSiteiQ92952.

Expressioni

Gene expression databases

BgeeiQ92952.
CleanExiHS_KCNN1.
GenevestigatoriQ92952.

Interactioni

Subunit structurei

Heterooligomer. The complex is composed of 4 channel subunits each of which binds to a calmodulin subunit which regulates the channel activity through calcium-binding By similarity.

Protein-protein interaction databases

BioGridi109981. 2 interactions.
IntActiQ92952. 1 interaction.
STRINGi9606.ENSP00000222249.

Structurei

3D structure databases

ProteinModelPortaliQ92952.
SMRiQ92952. Positions 296-461.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni384 – 46380Calmodulin-binding By similarity
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi509 – 51810Poly-Pro

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG320393.
HOGENOMiHOG000276908.
HOVERGENiHBG052241.
InParanoidiQ92952.
KOiK04942.
PhylomeDBiQ92952.
TreeFamiTF315015.

Family and domain databases

InterProiIPR013099. 2pore_dom_K_chnl_dom.
IPR004178. CaM-bd_dom.
IPR015449. K_chnl_Ca-activ_SK.
[Graphical view]
PANTHERiPTHR10153. PTHR10153. 1 hit.
PfamiPF02888. CaMBD. 1 hit.
PF07885. Ion_trans_2. 1 hit.
PF03530. SK_channel. 1 hit.
[Graphical view]
PRINTSiPR01451. SKCHANNEL.
SMARTiSM01053. CaMBD. 1 hit.
[Graphical view]
SUPFAMiSSF81327. SSF81327. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q92952-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MNSHSYNGSV GRPLGSGPGA LGRDPPDPEA GHPPQPPHSP GLQVVVAKSE    50
PARPSPGSPR GQPQDQDDDE DDEEDEAGRQ RASGKPSNVG HRLGHRRALF 100
EKRKRLSDYA LIFGMFGIVV MVTETELSWG VYTKESLYSF ALKCLISLST 150
AILLGLVVLY HAREIQLFMV DNGADDWRIA MTCERVFLIS LELAVCAIHP 200
VPGHYRFTWT ARLAFTYAPS VAEADVDVLL SIPMFLRLYL LGRVMLLHSK 250
IFTDASSRSI GALNKITFNT RFVMKTLMTI CPGTVLLVFS ISSWIIAAWT 300
VRVCERYHDK QEVTSNFLGA MWLISITFLS IGYGDMVPHT YCGKGVCLLT 350
GIMGAGCTAL VVAVVARKLE LTKAEKHVHN FMMDTQLTKR VKNAAANVLR 400
ETWLIYKHTR LVKKPDQARV RKHQRKFLQA IHQAQKLRSV KIEQGKLNDQ 450
ANTLTDLAKT QTVMYDLVSE LHAQHEELEA RLATLESRLD ALGASLQALP 500
GLIAQAIRPP PPPLPPRPGP GPQDQAARSS PCRWTPVAPS DCG 543
Length:543
Mass (Da):59,987
Last modified:January 23, 2007 - v2
Checksum:i13EFF47C263BCB11
GO
Isoform 2 (identifier: Q92952-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MPGPRAACSEPNPCTQVVM

Show »
Length:561
Mass (Da):61,827
Checksum:i66CA9A21C5FFDE74
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 11M → MPGPRAACSEPNPCTQVVM in isoform 2.
VSP_022501

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti513 – 54230PLPPR…APSDC → RLPRQRAGLDH in BAD86831. 1 Publication
Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U69883 mRNA. Translation: AAB09562.1.
AF131948
, AF131940, AF131941, AF131942, AF131943, AF131944, AF131945, AF131946, AF131947 Genomic DNA. Translation: AAD37507.1.
AB198191 mRNA. Translation: BAD86831.1.
BC075037 mRNA. Translation: AAH75037.3.
CCDSiCCDS67611.1. [Q92952-1]
RefSeqiNP_002239.2. NM_002248.4. [Q92952-1]
UniGeneiHs.158173.

Genome annotation databases

EnsembliENST00000222249; ENSP00000476519; ENSG00000105642. [Q92952-1]
GeneIDi3780.
KEGGihsa:3780.
UCSCiuc002nht.3. human. [Q92952-1]

Polymorphism databases

DMDMi124056468.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U69883 mRNA. Translation: AAB09562.1 .
AF131948
, AF131940 , AF131941 , AF131942 , AF131943 , AF131944 , AF131945 , AF131946 , AF131947 Genomic DNA. Translation: AAD37507.1 .
AB198191 mRNA. Translation: BAD86831.1 .
BC075037 mRNA. Translation: AAH75037.3 .
CCDSi CCDS67611.1. [Q92952-1 ]
RefSeqi NP_002239.2. NM_002248.4. [Q92952-1 ]
UniGenei Hs.158173.

3D structure databases

ProteinModelPortali Q92952.
SMRi Q92952. Positions 296-461.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 109981. 2 interactions.
IntActi Q92952. 1 interaction.
STRINGi 9606.ENSP00000222249.

Chemistry

BindingDBi Q92952.
ChEMBLi CHEMBL2369.
GuidetoPHARMACOLOGYi 381.

PTM databases

PhosphoSitei Q92952.

Polymorphism databases

DMDMi 124056468.

Proteomic databases

PaxDbi Q92952.
PRIDEi Q92952.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000222249 ; ENSP00000476519 ; ENSG00000105642 . [Q92952-1 ]
GeneIDi 3780.
KEGGi hsa:3780.
UCSCi uc002nht.3. human. [Q92952-1 ]

Organism-specific databases

CTDi 3780.
GeneCardsi GC19P018062.
HGNCi HGNC:6290. KCNN1.
MIMi 602982. gene.
neXtProti NX_Q92952.
PharmGKBi PA30070.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG320393.
HOGENOMi HOG000276908.
HOVERGENi HBG052241.
InParanoidi Q92952.
KOi K04942.
PhylomeDBi Q92952.
TreeFami TF315015.

Enzyme and pathway databases

Reactomei REACT_75896. Ca2+ activated K+ channels.

Miscellaneous databases

GeneWikii KCNN1.
GenomeRNAii 3780.
NextBioi 14833.
PROi Q92952.
SOURCEi Search...

Gene expression databases

Bgeei Q92952.
CleanExi HS_KCNN1.
Genevestigatori Q92952.

Family and domain databases

InterProi IPR013099. 2pore_dom_K_chnl_dom.
IPR004178. CaM-bd_dom.
IPR015449. K_chnl_Ca-activ_SK.
[Graphical view ]
PANTHERi PTHR10153. PTHR10153. 1 hit.
Pfami PF02888. CaMBD. 1 hit.
PF07885. Ion_trans_2. 1 hit.
PF03530. SK_channel. 1 hit.
[Graphical view ]
PRINTSi PR01451. SKCHANNEL.
SMARTi SM01053. CaMBD. 1 hit.
[Graphical view ]
SUPFAMi SSF81327. SSF81327. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Small-conductance, calcium-activated potassium channels from mammalian brain."
    Koehler M., Hirschberg B., Bond C.T., Kinzie J.M., Marrion N.V., Maylie J., Adelman J.P.
    Science 273:1709-1714(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
    Tissue: Hippocampus.
  2. "Gene structure and chromosome mapping of the human small-conductance calcium-activated potassium channel SK1 gene (KCNN1)."
    Litt M., LaMorticella D., Bond C.T., Adelman J.P.
    Cytogenet. Cell Genet. 86:70-73(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Molecular cloning of a small-conductance calcium-activated potassium channel from human fetal brain."
    Tagaya M., Higashioka M., Takagaki K., Ohgi T.
    Submitted (JAN-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
    Tissue: Fetal brain.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Fetal brain.

Entry informationi

Entry nameiKCNN1_HUMAN
AccessioniPrimary (citable) accession number: Q92952
Secondary accession number(s): Q5KR10, Q6DJU4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 121 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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