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Protein
Submitted name:

Putative integrase [Bacteriophage A118]

Gene

int

Organism
Listeria innocua serovar 6a (strain CLIP 11262)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi274 – 2741ZincCombined sources
Metal bindingi276 – 2761Zinc; via carbonyl oxygenCombined sources
Metal bindingi277 – 2771ZincCombined sources
Metal bindingi302 – 3021ZincCombined sources
Metal bindingi314 – 3141ZincCombined sources

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
  3. recombinase activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Putative integrase [Bacteriophage A118]Imported
Gene namesi
Name:intImported
OrganismiListeria innocua serovar 6a (strain CLIP 11262)Imported
Taxonomic identifieri272626 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
ProteomesiUP000002513: Chromosome

Organism-specific databases

GenoListiLIN2426.

Interactioni

Protein-protein interaction databases

STRINGi272626.lin2426.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KISX-ray3.20A/B/C/D133-452[»]
ProteinModelPortaliQ928V6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000235510.
KOiK06400.
OMAiIHEPIIS.
OrthoDBiEOG6V1M3D.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR011109. Recombinase.
IPR006118. Recombinase_CS.
IPR006119. Resolv_N.
IPR025827. Zn_ribbon_recom_dom.
[Graphical view]
PfamiPF07508. Recombinase. 1 hit.
PF00239. Resolvase. 1 hit.
PF13408. Zn_ribbon_recom. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS00397. RECOMBINASES_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q928V6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAAIYIRVS TQEQVENYSI QAQTEKLTAL CRSKDWDVYD TFIDGGYSGS
60 70 80 90 100
NMNRPALNEM LSKLHEIDAV VVYRLDRLSR SQKDTITLIE EYFLKNNVEF
110 120 130 140 150
VSLSETLDTS SPFGRAMIGI LSVFAQLERE TIRDRMVMGK IKRIEAGLPL
160 170 180 190 200
TTAKGRTFGY DVIDTKLYIN EEEAKQLRLI YDIFEEEQSI TFLQKRLKKL
210 220 230 240 250
GFKVRTYNRY NNWLTNDLYC GYVSYKDKVH VKGIHEPIIS EEQFYRVQEI
260 270 280 290 300
FSRMGKNPNM NKESASLLNN LVVCSKCGLG FVHRRKDTVS RGKKYHYRYY
310 320 330 340 350
SCKTYKHTHE LEKCGNKIWR ADKLEELIID RVNNYSFASR NIDKEDELDS
360 370 380 390 400
LNEKLKIEHA KKKRLFDLYI NGSYEVSELD SMMNDIDAQI NYYEAQIEAN
410 420 430 440 450
EELKKNKKIQ ENLADLATVD FNSLEFREKQ LYLKSLINKI YIDGEQVTIE

WL
Length:452
Mass (Da):53,087
Last modified:December 1, 2001 - v1
Checksum:iA1FB6F8F18541FAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596172 Genomic DNA. Translation: CAC97653.1.
PIRiAE1735.
RefSeqiNP_471756.1. NC_003212.1.
WP_010991183.1. NC_003212.1.

Genome annotation databases

EnsemblBacteriaiCAC97653; CAC97653; CAC97653.
GeneIDi1131206.
KEGGilin:lin2426.
PATRICi20301705. VBILisInn102668_2485.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596172 Genomic DNA. Translation: CAC97653.1.
PIRiAE1735.
RefSeqiNP_471756.1. NC_003212.1.
WP_010991183.1. NC_003212.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KISX-ray3.20A/B/C/D133-452[»]
ProteinModelPortaliQ928V6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272626.lin2426.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAC97653; CAC97653; CAC97653.
GeneIDi1131206.
KEGGilin:lin2426.
PATRICi20301705. VBILisInn102668_2485.

Organism-specific databases

GenoListiLIN2426.

Phylogenomic databases

HOGENOMiHOG000235510.
KOiK06400.
OMAiIHEPIIS.
OrthoDBiEOG6V1M3D.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR011109. Recombinase.
IPR006118. Recombinase_CS.
IPR006119. Resolv_N.
IPR025827. Zn_ribbon_recom_dom.
[Graphical view]
PfamiPF07508. Recombinase. 1 hit.
PF00239. Resolvase. 1 hit.
PF13408. Zn_ribbon_recom. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS00397. RECOMBINASES_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CLIP 11262Imported.
  2. "Attachment site recognition and regulation of directionality by the serine integrases."
    Rutherford K., Yuan P., Perry K., Sharp R., Van Duyne G.D.
    Nucleic Acids Res. 41:8341-8356(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.20 ANGSTROMS) OF 133-452 IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ928V6_LISIN
AccessioniPrimary (citable) accession number: Q928V6
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: February 4, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.