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Q928V6

- Q928V6_LISIN

UniProt

Q928V6 - Q928V6_LISIN

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Protein
Submitted name:

Putative integrase [Bacteriophage A118]

Gene
int
Organism
Listeria innocua serovar 6a (strain CLIP 11262)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi274 – 2741ZincImported
Metal bindingi276 – 2761Zinc; via carbonyl oxygenImported
Metal bindingi277 – 2771ZincImported
Metal bindingi302 – 3021ZincImported
Metal bindingi314 – 3141ZincImported

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
  3. recombinase activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-bindingImported, ZincImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative integrase [Bacteriophage A118]Imported
Gene namesi
Name:intImported
OrganismiListeria innocua serovar 6a (strain CLIP 11262)
Taxonomic identifieri272626 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
ProteomesiUP000002513: Chromosome

Organism-specific databases

GenoListiLIN2426.

Interactioni

Protein-protein interaction databases

STRINGi272626.lin2426.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KISX-ray3.20A/B/C/D133-452[»]
ProteinModelPortaliQ928V6.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000235510.
KOiK06400.
OMAiHRADIRI.
OrthoDBiEOG6V1M3D.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR011109. Recombinase.
IPR006118. Recombinase_CS.
IPR006119. Resolv_N.
IPR025827. Zn_ribbon_recom_dom.
[Graphical view]
PfamiPF07508. Recombinase. 1 hit.
PF00239. Resolvase. 1 hit.
PF13408. Zn_ribbon_recom. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS00397. RECOMBINASES_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q928V6-1 [UniParc]FASTAAdd to Basket

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MKAAIYIRVS TQEQVENYSI QAQTEKLTAL CRSKDWDVYD TFIDGGYSGS    50
NMNRPALNEM LSKLHEIDAV VVYRLDRLSR SQKDTITLIE EYFLKNNVEF 100
VSLSETLDTS SPFGRAMIGI LSVFAQLERE TIRDRMVMGK IKRIEAGLPL 150
TTAKGRTFGY DVIDTKLYIN EEEAKQLRLI YDIFEEEQSI TFLQKRLKKL 200
GFKVRTYNRY NNWLTNDLYC GYVSYKDKVH VKGIHEPIIS EEQFYRVQEI 250
FSRMGKNPNM NKESASLLNN LVVCSKCGLG FVHRRKDTVS RGKKYHYRYY 300
SCKTYKHTHE LEKCGNKIWR ADKLEELIID RVNNYSFASR NIDKEDELDS 350
LNEKLKIEHA KKKRLFDLYI NGSYEVSELD SMMNDIDAQI NYYEAQIEAN 400
EELKKNKKIQ ENLADLATVD FNSLEFREKQ LYLKSLINKI YIDGEQVTIE 450
WL 452
Length:452
Mass (Da):53,087
Last modified:December 1, 2001 - v1
Checksum:iA1FB6F8F18541FAF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL596172 Genomic DNA. Translation: CAC97653.1.
PIRiAE1735.
RefSeqiNP_471756.1. NC_003212.1.
WP_010991183.1. NC_003212.1.

Genome annotation databases

EnsemblBacteriaiCAC97653; CAC97653; CAC97653.
GeneIDi1131206.
KEGGilin:lin2426.
PATRICi20301705. VBILisInn102668_2485.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL596172 Genomic DNA. Translation: CAC97653.1 .
PIRi AE1735.
RefSeqi NP_471756.1. NC_003212.1.
WP_010991183.1. NC_003212.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4KIS X-ray 3.20 A/B/C/D 133-452 [» ]
ProteinModelPortali Q928V6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272626.lin2426.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAC97653 ; CAC97653 ; CAC97653 .
GeneIDi 1131206.
KEGGi lin:lin2426.
PATRICi 20301705. VBILisInn102668_2485.

Organism-specific databases

GenoListi LIN2426.

Phylogenomic databases

HOGENOMi HOG000235510.
KOi K06400.
OMAi HRADIRI.
OrthoDBi EOG6V1M3D.

Family and domain databases

Gene3Di 3.40.50.1390. 1 hit.
InterProi IPR011109. Recombinase.
IPR006118. Recombinase_CS.
IPR006119. Resolv_N.
IPR025827. Zn_ribbon_recom_dom.
[Graphical view ]
Pfami PF07508. Recombinase. 1 hit.
PF00239. Resolvase. 1 hit.
PF13408. Zn_ribbon_recom. 1 hit.
[Graphical view ]
SMARTi SM00857. Resolvase. 1 hit.
[Graphical view ]
SUPFAMi SSF53041. SSF53041. 1 hit.
PROSITEi PS00397. RECOMBINASES_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CLIP 11262.
  2. "Attachment site recognition and regulation of directionality by the serine integrases."
    Rutherford K., Yuan P., Perry K., Sharp R., Van Duyne G.D.
    Nucleic Acids Res. 41:8341-8356(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.20 ANGSTROMS) OF 133-452 IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ928V6_LISIN
AccessioniPrimary (citable) accession number: Q928V6
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: September 3, 2014
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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