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Q928V6

- Q928V6_LISIN

UniProt

Q928V6 - Q928V6_LISIN

Protein
Submitted name:

Putative integrase [Bacteriophage A118]

Gene

int

Organism
Listeria innocua serovar 6a (strain CLIP 11262)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (01 Dec 2001)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi274 – 2741ZincImported
    Metal bindingi276 – 2761Zinc; via carbonyl oxygenImported
    Metal bindingi277 – 2771ZincImported
    Metal bindingi302 – 3021ZincImported
    Metal bindingi314 – 3141ZincImported

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. metal ion binding Source: UniProtKB-KW
    3. recombinase activity Source: InterPro

    Keywords - Ligandi

    Metal-bindingImported, ZincImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative integrase [Bacteriophage A118]Imported
    Gene namesi
    Name:intImported
    OrganismiListeria innocua serovar 6a (strain CLIP 11262)Imported
    Taxonomic identifieri272626 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
    ProteomesiUP000002513: Chromosome

    Organism-specific databases

    GenoListiLIN2426.

    Interactioni

    Protein-protein interaction databases

    STRINGi272626.lin2426.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4KISX-ray3.20A/B/C/D133-452[»]
    ProteinModelPortaliQ928V6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000235510.
    KOiK06400.
    OMAiHRADIRI.
    OrthoDBiEOG6V1M3D.

    Family and domain databases

    Gene3Di3.40.50.1390. 1 hit.
    InterProiIPR011109. Recombinase.
    IPR006118. Recombinase_CS.
    IPR006119. Resolv_N.
    IPR025827. Zn_ribbon_recom_dom.
    [Graphical view]
    PfamiPF07508. Recombinase. 1 hit.
    PF00239. Resolvase. 1 hit.
    PF13408. Zn_ribbon_recom. 1 hit.
    [Graphical view]
    SMARTiSM00857. Resolvase. 1 hit.
    [Graphical view]
    SUPFAMiSSF53041. SSF53041. 1 hit.
    PROSITEiPS00397. RECOMBINASES_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q928V6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAAIYIRVS TQEQVENYSI QAQTEKLTAL CRSKDWDVYD TFIDGGYSGS    50
    NMNRPALNEM LSKLHEIDAV VVYRLDRLSR SQKDTITLIE EYFLKNNVEF 100
    VSLSETLDTS SPFGRAMIGI LSVFAQLERE TIRDRMVMGK IKRIEAGLPL 150
    TTAKGRTFGY DVIDTKLYIN EEEAKQLRLI YDIFEEEQSI TFLQKRLKKL 200
    GFKVRTYNRY NNWLTNDLYC GYVSYKDKVH VKGIHEPIIS EEQFYRVQEI 250
    FSRMGKNPNM NKESASLLNN LVVCSKCGLG FVHRRKDTVS RGKKYHYRYY 300
    SCKTYKHTHE LEKCGNKIWR ADKLEELIID RVNNYSFASR NIDKEDELDS 350
    LNEKLKIEHA KKKRLFDLYI NGSYEVSELD SMMNDIDAQI NYYEAQIEAN 400
    EELKKNKKIQ ENLADLATVD FNSLEFREKQ LYLKSLINKI YIDGEQVTIE 450
    WL 452
    Length:452
    Mass (Da):53,087
    Last modified:December 1, 2001 - v1
    Checksum:iA1FB6F8F18541FAF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL596172 Genomic DNA. Translation: CAC97653.1.
    PIRiAE1735.
    RefSeqiNP_471756.1. NC_003212.1.
    WP_010991183.1. NC_003212.1.

    Genome annotation databases

    EnsemblBacteriaiCAC97653; CAC97653; CAC97653.
    GeneIDi1131206.
    KEGGilin:lin2426.
    PATRICi20301705. VBILisInn102668_2485.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL596172 Genomic DNA. Translation: CAC97653.1 .
    PIRi AE1735.
    RefSeqi NP_471756.1. NC_003212.1.
    WP_010991183.1. NC_003212.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4KIS X-ray 3.20 A/B/C/D 133-452 [» ]
    ProteinModelPortali Q928V6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272626.lin2426.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAC97653 ; CAC97653 ; CAC97653 .
    GeneIDi 1131206.
    KEGGi lin:lin2426.
    PATRICi 20301705. VBILisInn102668_2485.

    Organism-specific databases

    GenoListi LIN2426.

    Phylogenomic databases

    HOGENOMi HOG000235510.
    KOi K06400.
    OMAi HRADIRI.
    OrthoDBi EOG6V1M3D.

    Family and domain databases

    Gene3Di 3.40.50.1390. 1 hit.
    InterProi IPR011109. Recombinase.
    IPR006118. Recombinase_CS.
    IPR006119. Resolv_N.
    IPR025827. Zn_ribbon_recom_dom.
    [Graphical view ]
    Pfami PF07508. Recombinase. 1 hit.
    PF00239. Resolvase. 1 hit.
    PF13408. Zn_ribbon_recom. 1 hit.
    [Graphical view ]
    SMARTi SM00857. Resolvase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53041. SSF53041. 1 hit.
    PROSITEi PS00397. RECOMBINASES_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CLIP 11262Imported.
    2. "Attachment site recognition and regulation of directionality by the serine integrases."
      Rutherford K., Yuan P., Perry K., Sharp R., Van Duyne G.D.
      Nucleic Acids Res. 41:8341-8356(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.20 ANGSTROMS) OF 133-452 IN COMPLEX WITH ZINC.

    Entry informationi

    Entry nameiQ928V6_LISIN
    AccessioniPrimary (citable) accession number: Q928V6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 1, 2001
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported

    External Data

    Dasty 3