Reviewed,
UniProtKB/Swiss-Prot Q92835 (SHIP1_HUMAN)
Last modified
February 9, 2010.
Version 69.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
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Names and origin
| Protein names | Recommended name: Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 EC=3.1.3.n1 Alternative name(s): SH2 domain-containing inositol-5'-phosphatase 1 Short name=SH2 domain-containing inositol phosphatase 1 Short name=SHIP-1 Inositol polyphosphate-5-phosphatase of 145 kDa Short name=SIP-145 p150Ship Short name=hp51CN | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Complete proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1189 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Phosphatidylinositol (PtdIns) phosphatase that specifically hydrolyzes the 5-phosphate of phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) to produce PtdIns(3,4)P2, thereby negatively regulating the PI3K (phosphoinositide 3-kinase) pathways. Acts as a negative regulator of B-cell antigen receptor signaling. Mediates signaling from the FC-gamma-RIIB receptor (FCGR2B), playing a central role in terminating signal transduction from activating immune/hematopoietic cell receptor systems. Acts as a negative regulator of myeloid cell proliferation/survival and chemotaxis, mast cell degranulation, immune cells homeostasis, integrin alpha-IIb/beta-3 signaling in platelets and JNK signaling in B-cells. Regulates proliferation of osteoclast precursors, macrophage programming, phagocytosis and activation and is required for endotoxin tolerance. Involved in the control of cell-cell junctions, CD32a signaling in neutrophils and modulation of EGF-induced phospholipase C activity. Key regulator of neutrophil migration, by governing the formation of the leading edge and polarization required for chemotaxis. Modulates FCGR3/CD16-mediated cytotoxicity in NK cells. Mediates the activin/TGF-beta-induced apoptosis through its Smad-dependent expression. May also hydrolyze PtdIns(1,3,4,5)P4, and could thus affect the levels of the higher inositol polyphosphates like InsP6. Ref.9 Ref.11 |
| Catalytic activity | Phosphatidylinositol 3,4,5-trisphosphate + H2O = phosphatidylinositol 3,4-bisphosphate + phosphate. Ref.1 Ref.3 |
| Enzyme regulation | Activated upon translocation to the sites of synthesis of PtdIns(3,4,5)P3 in the membrane By similarity. |
| Subunit structure | Interacts with tyrosine phosphorylated forms of SHC1, DOK1, DOK3, PTPN11/SHP-2, SLAMF1/CD150. Interacts with PTPN11 in response to IL-3. Interacts with receptors EPOR, MS4A2/FCER1B and FCER1G, FCGR2A, FCGR2B and FCGR3. Interacts with GRB2 and PLCG1. Interacts with tyrosine kinases SRC and TEC. Interacts with FCGR2A, leading to regulate gene expression during the phagocytic process. Interacts with c-Met/MET By similarity. Ref.3 Ref.2 Ref.5 Ref.7 Ref.8 |
| Subcellular location | Cytoplasm. Membrane; Peripheral membrane protein. Note: Translocates to the plasma membrane when activated, translocation is probably due to different mechanisms depending on the stimulus and cell type. Partly translocated via its SH2 domain which mediates interaction with tyrosine phosphorylated receptors such as the FC-gamma-RIIB receptor (FCGR2B) or CD16/FCGR3. Tyrosine phosphorylation may also participate to membrane localization By similarity. Ref.8 |
| Tissue specificity | Specifically expressed in immune and hematopoietic cells. Expressed in bone marrow and blood cells. Levels vary considerably within this compartment. Present in at least 74% of immature CD34+ cells, whereas within the more mature population of CD33+ cells, it is present in only 10% of cells. Present in the majority of T-cells, while it is present in a minority of B-cells (at protein level). Ref.1 Ref.2 Ref.5 Ref.4 |
| Domain | The SH2 domain interacts with tyrosine phosphorylated forms of proteins such as SHC1 or PTPN11/SHP-2. It competes with that of GRB2 for binding to phosphorylated SHC1 to inhibit the Ras pathway. It is also required for tyrosine phosphorylation By similarity. The NPXY sequence motif found in many tyrosine-phosphorylated proteins is required for the specific binding of the PID domain By similarity. |
| Post-translational modification | Tyrosine phosphorylated by the members of the SRC family after exposure to a diverse array of extracellular stimuli such as cytokines, growth factors, antibodies, chemokines, integrin ligands and hypertonic and oxidative stress. Phosphorylated upon IgG receptor FCGR2B-binding. Ref.5 Ref.8 Ref.10 Ref.12 |
| Sequence similarities | Belongs to the inositol-1,4,5-trisphosphate 5-phosphatase family. Contains 1 SH2 domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Apoptosis Immune response |
| Cellular component | Cytoplasm Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat SH2 domain SH3-binding |
| Molecular function | Hydrolase |
| PTM | Acetylation Phosphoprotein |
| Technical term | 3D-structure Complete proteome |
| Gene Ontology (GO) | |
| Biological process | apoptosis Inferred from electronic annotation. Source: UniProtKB-KW phosphate metabolic process Ref.1Traceable author statement. Source: ProtInc |
| Cellular component | cytosol Inferred from Experiment. Source: Reactome extrinsic to membraneInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | SH3 domain binding Inferred from electronic annotation. Source: UniProtKB-KW inositol-polyphosphate 5-phosphatase activity Ref.1Traceable author statement. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q92835-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q92835-2) The sequence of this isoform differs from the canonical sequence as follows: 117-117: Missing. | ||||||
| Isoform 3 (identifier: Q92835-3) Also known as: SIP-110; The sequence of this isoform differs from the canonical sequence as follows: 1-212: Missing. 213-222: TTLLCKELYG → MFTLSPAPR |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1189 | 1189 | Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 | PRO_0000302866 | ||||||||||||||||||||
Regions | ||||||||||||||||||||||||
| Domain | 5 – 101 | 97 | SH2 | |||||||||||||||||||||
| Motif | 124 – 129 | 6 | SH3-binding 1 | |||||||||||||||||||||
| Motif | 912 – 915 | 4 | NPXY motif 1 | |||||||||||||||||||||
| Motif | 969 – 974 | 6 | SH3-binding 2 | |||||||||||||||||||||
| Motif | 1019 – 1022 | 4 | NPXY motif 2 | |||||||||||||||||||||
| Motif | 1040 – 1051 | 12 | SH3-binding 3 | |||||||||||||||||||||
| Compositional bias | 920 – 1148 | 229 | Pro-rich | |||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||
| Modified residue | 371 | 1 | N6-acetyllysine Ref.14 | |||||||||||||||||||||
| Modified residue | 865 | 1 | Phosphotyrosine Ref.12 | |||||||||||||||||||||
| Modified residue | 915 | 1 | Phosphotyrosine Ref.10 | |||||||||||||||||||||
| Modified residue | 934 | 1 | Phosphoserine By similarity | |||||||||||||||||||||
| Modified residue | 944 | 1 | Phosphotyrosine By similarity | |||||||||||||||||||||
| Modified residue | 971 | 1 | Phosphoserine By similarity | |||||||||||||||||||||
| Modified residue | 1022 | 1 | Phosphotyrosine Ref.12 | |||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||
| Alternative sequence | 1 – 212 | 212 | Missing in isoform 3. | VSP_027977 | ||||||||||||||||||||
| Alternative sequence | 117 | 1 | Missing in isoform 2. | VSP_027978 | ||||||||||||||||||||
| Alternative sequence | 213 – 222 | 10 | TTLLCKELYG → MFTLSPAPR in isoform 3. | VSP_027979 | ||||||||||||||||||||
| Natural variant | 685 | 1 | V → E in one patient with acute myeloid leukemya; somatic mutation. Ref.16 | VAR_034979 | ||||||||||||||||||||
| Natural variant | 1169 | 1 | H → Y: dbSNP rs9247. Ref.1 Ref.6 | VAR_059358 | ||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||
| Sequence conflict | 25 – 26 | 2 | DG → GT in AAB49680. Ref.4 | |||||||||||||||||||||
| Sequence conflict | 1029 | 1 | P → H in AAB49680. Ref.4 | |||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||
| Beta strand | 4 – 6 | 3 | ||||||||||||||||||||||
| Helix | 12 – 21 | 10 | ||||||||||||||||||||||
| Beta strand | 28 – 32 | 5 | ||||||||||||||||||||||
| Beta strand | 39 – 45 | 7 | ||||||||||||||||||||||
| Beta strand | 50 – 57 | 8 | ||||||||||||||||||||||
| Beta strand | 63 – 65 | 3 | ||||||||||||||||||||||
| Beta strand | 76 – 78 | 3 | ||||||||||||||||||||||
| Helix | 79 – 85 | 7 | ||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and expression of a human placenta inositol 1,3,4,5-tetrakisphosphate and phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase." Drayer A.L., Pesesse X., De Smedt F., Woscholski R., Parker P., Erneux C. Biochem. Biophys. Res. Commun. 225:243-249(1996) [PubMed: 8769125] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), ENZYME ACTIVITY, TISSUE SPECIFICITY, VARIANT TYR-1169. |
| [2] | "Cloning and characterization of human SHIP, the 145-kD inositol 5-phosphatase that associates with SHC after cytokine stimulation." Ware M.D., Rosten P., Damen J.E., Liu L., Humphries R.K., Krystal G. Blood 88:2833-2840(1996) [PubMed: 8874179] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), TISSUE SPECIFICITY, INTERACTION WITH SHC1. |
| [3] | "Multiple forms of an inositol polyphosphate 5-phosphatase form signaling complexes with Shc and Grb2." Kavanaugh W.M., Pot D.A., Chin S.M., Deuter-Reinhard M., Jefferson A.B., Norris F.A., Masiarz F.R., Cousens L.S., Majerus P.W., Williams L.T. Curr. Biol. 6:438-445(1996) [PubMed: 8723348] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), NUCLEOTIDE SEQUENCE [MRNA] OF 1-1139 (ISOFORM 1), ENZYME ACTIVITY, INTERACTION WITH GRB2. Tissue: Lung. |
| [4] | "The human SHIP gene is differentially expressed in cell lineages of the bone marrow and blood." Geier S.J., Algate P.A., Carlberg K., Flowers D., Friedman C., Trask B., Rohrschneider L.R. Blood 89:1876-1885(1997) [PubMed: 9058707] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY. |
| [5] | "Purification and molecular cloning of SH2- and SH3-containing inositol polyphosphate-5-phosphatase, which is involved in the signaling pathway of granulocyte-macrophage colony-stimulating factor, erythropoietin, and Bcr-Abl." Odai H., Sasaki K., Iwamatsu A., Nakamoto T., Ueno H., Yamagata T., Mitani K., Yazaki Y., Hirai H. Blood 89:2745-2756(1997) [PubMed: 9108392] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, PHOSPHORYLATION, INTERACTION WITH GRB2. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANT TYR-1169. Tissue: B-cell and Lymph. |
| [7] | "CDw150 associates with src-homology 2-containing inositol phosphatase and modulates CD95-mediated apoptosis." Mikhalap S.V., Shlapatska L.M., Berdova A.G., Law C.L., Clark E.A., Sidorenko S.P. J. Immunol. 162:5719-5727(1999) [PubMed: 10229804] [Abstract] Cited for: INTERACTION WITH SLAMF1. |
| [8] | "The phosphatidylinositol polyphosphate 5-phosphatase SHIP1 associates with the dok1 phosphoprotein in bcr-Abl transformed cells." Dunant N.M., Wisniewski D., Strife A., Clarkson B., Resh M.D. Cell. Signal. 12:317-326(2000) [PubMed: 10822173] [Abstract] Cited for: SUBCELLULAR LOCATION, PHOSPHORYLATION, INTERACTION WITH DOK1. |
| [9] | "Evidence that SHIP-1 contributes to phosphatidylinositol 3,4,5-trisphosphate metabolism in T lymphocytes and can regulate novel phosphoinositide 3-kinase effectors." Freeburn R.W., Wright K.L., Burgess S.J., Astoul E., Cantrell D.A., Ward S.G. J. Immunol. 169:5441-5450(2002) [PubMed: 12421919] [Abstract] Cited for: FUNCTION. |
| [10] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-915, MASS SPECTROMETRY. |
| [11] | "The Src homology 2-containing inositol 5-phosphatase 1 (SHIP1) is involved in CD32a signaling in human neutrophils." Vaillancourt M., Levasseur S., Tremblay M.-L., Marois L., Rollet-Labelle E., Naccache P.H. Cell. Signal. 18:2022-2032(2006) [PubMed: 16682172] [Abstract] Cited for: FUNCTION. |
| [12] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-865 AND TYR-1022, MASS SPECTROMETRY. |
| [13] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [14] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-371, MASS SPECTROMETRY. |
| [15] | "Solution structure of the human SHIP SH2 domain." RIKEN structural genomics initiative (RSGI) Submitted (APR-2008) to the PDB data bank Cited for: STRUCTURE BY NMR OF 1-112. |
| [16] | "Possible dominant-negative mutation of the SHIP gene in acute myeloid leukemia." Luo J.-M., Yoshida H., Komura S., Ohishi N., Pan L., Shigeno K., Hanamura I., Miura K., Iida S., Ueda R., Naoe T., Akao Y., Ohno R., Ohnishi K. Leukemia 17:1-8(2003) [PubMed: 12529653] [Abstract] Cited for: VARIANT GLU-685. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X98429 mRNA. Translation: CAA67071.1. U57650 mRNA. Translation: AAB53573.1. U50040 mRNA. Translation: AAC50453.1. U50041 mRNA. Translation: AAC50454.1. Different initiation. U84400 mRNA. Translation: AAB49680.1. U53470 mRNA. Translation: AAD00081.1. BC062985 mRNA. Translation: AAH62985.1. BC099920 mRNA. Translation: AAH99920.1. BC113580 mRNA. Translation: AAI13581.1. BC113582 mRNA. Translation: AAI13583.1. | ||||||||||||
| IPI | IPI00329213. IPI00604549. IPI00847557. | ||||||||||||
| PIR | JC4889. | ||||||||||||
| RefSeq | NP_001017915.1. NP_005532.2. | ||||||||||||
| UniGene | Hs.262886 Hs.601911 | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| SMR | Q92835. Positions 387-713. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q92835. 6 interactions. | ||||||||||||
| STRING | Q92835. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q92835. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | Q92835. | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000359570; ENSP00000352575; ENSG00000168918; Homo sapiens. [Genome view] | ||||||||||||
| GeneID | 3635. | ||||||||||||
| KEGG | hsa:3635. | ||||||||||||
| UCSC | uc002vtv.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 3635. | ||||||||||||
| GeneCards | GC02P233633. | ||||||||||||
| HGNC | HGNC:6079. INPP5D. | ||||||||||||
| MIM | 601582. gene. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG07774. | ||||||||||||
| HOVERGEN | Q92835. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| BioCyc | MetaCyc:ENSG00000168918-MONOMER. | ||||||||||||
| Reactome | REACT_604. Hemostasis. REACT_6900. Signaling in Immune system. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q92835. | ||||||||||||
| Bgee | Q92835. | ||||||||||||
| CleanEx | HS_INPP5D. | ||||||||||||
| Genevestigator | Q92835. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR005135. Endo/exonuclease/phosphatase. IPR000300. IPPc. IPR000980. SH2. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:3.30.505.10. SH2. 1 hit. | ||||||||||||
| Pfam | PF03372. Exo_endo_phos. 1 hit. PF00017. SH2. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00401. SH2DOMAIN. | ||||||||||||
| SMART | SM00128. IPPc. 1 hit. SM00252. SH2. 1 hit. [Graphical view] | ||||||||||||
| PROSITE | PS50001. SH2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other Resources | |||||||||||||
| NextBio | 14225. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | SHIP1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q92835 Secondary accession number(s): O00145 Q9UE80 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


