Q92796 (DLG3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 136.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Disks large homolog 3 Alternative name(s): Neuroendocrine-DLG Synapse-associated protein 102 Short name=SAP-102 Short name=SAP102 XLMR | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 817 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling. |
| Subunit structure | Interacts through its PDZ domains with NETO1, GRIN2B and SYNGAP1. Interacts through its guanylate kinase-like domain with DLGAP1, DLGAP2, DLGAP3 and DLGAP4 By similarity. Interacts through its PDZ domains with APC. Interacts through its first two PDZ domains with ERBB4. Interacts through its third PDZ domain with NLGN1, and probably with NLGN2 and NLGN3. Interacts with FRMPD4 (via C-terminus). Interacts with LRFN1, LRFN2 and LRFN4. Ref.1 Ref.7 Ref.8 Ref.10 Ref.11 |
| Involvement in disease | Mental retardation, X-linked 90 (MRX90) [MIM:300850]: A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptative behavior and manifested during the developmental period. Intellectual deficiency is the only primary symptom of non-syndromic X-linked mental retardation, while syndromic mental retardation presents with associated physical, neurological and/or psychiatric manifestations. |
| Sequence similarities | Belongs to the MAGUK family. Contains 1 guanylate kinase-like domain. Contains 3 PDZ (DHR) domains. Contains 1 SH3 domain. |
| Sequence caution | The sequence BAA86546.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| PPP1CA | P62136 | 2 | EBI-80440,EBI-357253 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q92796-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q92796-2) The sequence of this isoform differs from the canonical sequence as follows: 1-336: Missing. 337-381: HISHNSSLGY...RHMLAEEDFT → MERARKFSGS...LRSLRPGGDA 592-606: DFPGLSDDYYGAKNL → SIKTKRKKSFRLSRKFPFYKSKENMAQESSIQEQGVTSNTSDSESSS | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q92796-3) The sequence of this isoform differs from the canonical sequence as follows: 1-483: Missing. 592-606: DFPGLSDDYYGAKNL → SIKTKRKKSFRLSRKFPFYKSKENMAQESSIQEQGVTSNTSDSESSS | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 817 | 817 | Disks large homolog 3 | PRO_0000094557 | ||||||||||||||||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 130 – 217 | 88 | PDZ 1 | |||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 226 – 311 | 86 | PDZ 2 | |||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 379 – 465 | 87 | PDZ 3 | |||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 503 – 568 | 66 | SH3 | |||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 627 – 802 | 176 | Guanylate kinase-like | |||||||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 673 | 1 | Phosphotyrosine By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 483 | 483 | Missing in isoform 3. | VSP_043717 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 336 | 336 | Missing in isoform 2. | VSP_035940 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 337 – 381 | 45 | HISHN…EEDFT → MERARKFSGSGLAMGLGSAS ASAWRRASQRWAWPLRSLRP GGDA in isoform 2. | VSP_035941 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 592 – 606 | 15 | DFPGL…GAKNL → SIKTKRKKSFRLSRKFPFYK SKENMAQESSIQEQGVTSNT SDSESSS in isoform 2 and isoform 3. | VSP_035942 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Natural variant | 40 | 1 | G → R in a colorectal cancer sample; somatic mutation. Ref.15 | VAR_036591 | ||||||||||||||||||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 87 | 1 | P → L in AAB61453. Ref.1 | |||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 190 | 1 | D → E in AAB61453. Ref.1 | |||||||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 127 – 135 | 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 142 – 147 | 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 160 – 165 | 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 170 – 174 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 182 – 186 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 196 – 205 | 10 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 208 – 217 | 10 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 224 – 230 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 238 – 242 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 255 – 260 | 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 265 – 269 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 277 – 281 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 291 – 299 | 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 303 – 310 | 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 383 – 390 | 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 396 – 398 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 416 – 418 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 419 – 422 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 431 – 437 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 445 – 453 | 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 457 – 464 | 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 467 – 475 | 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and characterization of NE-dlg: a novel human homolog of the Drosophila discs large (dlg) tumor suppressor protein interacts with the APC protein." Makino K., Kuwahara H., Masuko N., Nishiyama Y., Morisaki T., Sasaki J., Nakao M., Kuwano A., Nakata M., Ushio Y., Saya H. Oncogene 14:2425-2433(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INTERACTION WITH APC. Tissue: Fetal brain. |
| [2] | "Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Kikuno R., Hirosawa M., Nomura N., Ohara O. DNA Res. 6:337-345(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). Tissue: Thymus and Trachea. |
| [4] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [7] | "Binding of neuroligins to PSD-95." Irie M., Hata Y., Takeuchi M., Ichtchenko K., Toyoda A., Hirao K., Takai Y., Rosahl T.W., Suedhof T.C. Science 277:1511-1515(1997) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH NLGN1; NLGN2 AND NLGN3. |
| [8] | "The neuregulin receptor ErbB-4 interacts with PDZ-containing proteins at neuronal synapses." Garcia R.A., Vasudevan K., Buonanno A. Proc. Natl. Acad. Sci. U.S.A. 97:3596-3601(2000) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ERBB4. |
| [9] | "Mutations in the DLG3 gene cause nonsyndromic X-linked mental retardation." Tarpey P., Parnau J., Blow M., Woffendin H., Bignell G., Cox C., Cox J., Davies H., Edkins S., Holden S., Korny A., Mallya U., Moon J., O'Meara S., Parker A., Stephens P., Stevens C., Teague J. Raymond F.L.Am. J. Hum. Genet. 75:318-324(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN MRX90. |
| [10] | "SALM synaptic cell adhesion-like molecules regulate the differentiation of excitatory synapses." Ko J., Kim S., Chung H.S., Kim K., Han K., Kim H., Jun H., Kaang B.-K., Kim E. Neuron 50:233-245(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH LRFN1; LRFN2 AND LRFN4. |
| [11] | "Preso, a novel PSD-95-interacting FERM and PDZ domain protein that regulates dendritic spine morphogenesis." Lee H.W., Choi J., Shin H., Kim K., Yang J., Na M., Choi S.Y., Kang G.B., Eom S.H., Kim H., Kim E. J. Neurosci. 28:14546-14556(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH FRMPD4. |
| [12] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [13] | "Solution structure of the third PDZ domain of synapse-associated protein 102." RIKEN structural genomics initiative (RSGI) Submitted (MAR-2004) to the PDB data bank Cited for: STRUCTURE BY NMR OF 382-475. |
| [14] | "The crystal structure of the second PDZ domain of human DLG3." Structural genomics consortium (SGC) Submitted (DEC-2005) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.1 ANGSTROMS) OF 223-314. |
| [15] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] ARG-40. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | U49089 mRNA. Translation: AAB61453.1. AB033058 mRNA. Translation: BAA86546.1. Different initiation. AK303377 mRNA. Translation: BAG64433.1. AK304020 mRNA. Translation: BAG64935.1. AK316518 mRNA. Translation: BAH14889.1. AL139109 Genomic DNA. No translation available. AL139398 Genomic DNA. Translation: CAI41022.1. AL139398 Genomic DNA. Translation: CAI41023.1. CH471132 Genomic DNA. Translation: EAX05333.1. CH471132 Genomic DNA. Translation: EAX05335.1. CH471132 Genomic DNA. Translation: EAX05337.1. CH471132 Genomic DNA. Translation: EAX05338.1. BC093864 mRNA. Translation: AAH93864.1. BC093866 mRNA. Translation: AAH93866.1. | ||||||||||||||||||||||||
| IPI | IPI00023343. IPI00647338. IPI00952698. | ||||||||||||||||||||||||
| RefSeq | NP_001159750.1. NM_001166278.1. NP_065781.1. NM_020730.2. NP_066943.2. NM_021120.3. | ||||||||||||||||||||||||
| UniGene | Hs.721586. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||||||||
| ProteinModelPortal | Q92796. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| IntAct | Q92796. 3 interactions. | ||||||||||||||||||||||||
| MINT | MINT-109320. | ||||||||||||||||||||||||
| STRING | 9606.ENSP00000363480. | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| PhosphoSite | Q92796. | ||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||
| DMDM | 218512007. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PaxDb | Q92796. | ||||||||||||||||||||||||
| PRIDE | Q92796. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| DNASU | 1741. | ||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENST00000374355; ENSP00000363475; ENSG00000082458. ENST00000374360; ENSP00000363480; ENSG00000082458. ENST00000542398; ENSP00000441393; ENSG00000082458. | ||||||||||||||||||||||||
| GeneID | 1741. | ||||||||||||||||||||||||
| KEGG | hsa:1741. | ||||||||||||||||||||||||
| UCSC | uc004dyi.2. human. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 1741. | ||||||||||||||||||||||||
| GeneCards | GC0XP069664. | ||||||||||||||||||||||||
| H-InvDB | HIX0016853. | ||||||||||||||||||||||||
| HGNC | HGNC:2902. DLG3. | ||||||||||||||||||||||||
| HPA | HPA001733. | ||||||||||||||||||||||||
| MIM | 300189. gene. 300850. phenotype. | ||||||||||||||||||||||||
| neXtProt | NX_Q92796. | ||||||||||||||||||||||||
| Orphanet | 777. X-linked nonsyndromic intellectual deficit. | ||||||||||||||||||||||||
| PharmGKB | PA164741439. | ||||||||||||||||||||||||
| HUGE | Search... | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| eggNOG | COG0194. | ||||||||||||||||||||||||
| HOGENOM | HOG000232102. | ||||||||||||||||||||||||
| HOVERGEN | HBG107814. | ||||||||||||||||||||||||
| KO | K12075. | ||||||||||||||||||||||||
| OMA | RASQRWA. | ||||||||||||||||||||||||
| PhylomeDB | Q92796. | ||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||
| Reactome | REACT_111045. Developmental Biology. REACT_13685. Neuronal System. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| ArrayExpress | Q92796. | ||||||||||||||||||||||||
| Bgee | Q92796. | ||||||||||||||||||||||||
| CleanEx | HS_DLG3. | ||||||||||||||||||||||||
| Genevestigator | Q92796. | ||||||||||||||||||||||||
| GermOnline | ENSG00000082458. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| InterPro | IPR008144. Guanylate_kin. IPR008145. Guanylate_kin/L-typ_Ca_channel. IPR020590. Guanylate_kinase_CS. IPR016313. M-assoc_guanylate_kinase. IPR019590. MAGUK_PEST_N. IPR001478. PDZ. IPR019583. PDZ_assoc. IPR001452. SH3_domain. [Graphical view] | ||||||||||||||||||||||||
| Pfam | PF00625. Guanylate_kin. 1 hit. PF10608. MAGUK_N_PEST. 1 hit. PF00595. PDZ. 3 hits. PF10600. PDZ_assoc. 1 hit. PF00018. SH3_1. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| PIRSF | PIRSF001741. MAGUK_DLGH. 1 hit. | ||||||||||||||||||||||||
| SMART | SM00072. GuKc. 1 hit. SM00228. PDZ. 3 hits. SM00326. SH3. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| SUPFAM | SSF50156. PDZ. 3 hits. SSF50044. SH3. 1 hit. | ||||||||||||||||||||||||
| PROSITE | PS00856. GUANYLATE_KINASE_1. 1 hit. PS50052. GUANYLATE_KINASE_2. 1 hit. PS50106. PDZ. 3 hits. PS50002. SH3. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| ChiTaRS | DLG3. human. | ||||||||||||||||||||||||
| EvolutionaryTrace | Q92796. | ||||||||||||||||||||||||
| GenomeRNAi | 1741. | ||||||||||||||||||||||||
| NextBio | 7061. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | DLG3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q92796 Secondary accession number(s): B4E0H1 Q9ULI8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
