Q92752 (TENR_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 112.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Tenascin-R Short name=TN-R Alternative name(s): Janusin Restrictin | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1358 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. These interactions can influence cellular behavior by either evoking a stable adhesion and differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation. Interaction with CNTN1 induces a repulsion of neurons and an inhibition of neurite outgrowth. Interacts with SCN2B may play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier. TNR-linked chondroitin sulfate glycosaminoglycans are involved in the interaction with FN1 and mediate inhibition of cell adhesion and neurite outgrowth. The highly regulated addition of sulfated carbohydrate structure may modulate the adhesive properties of TNR over the course of development and during synapse maintenance By similarity. |
| Subunit structure | Forms oligomers. Interacts with CNTN1, TNC, and FN1. Interacts with BCAN and ACAN in a calcium-dependent manner. Interacts with SCN2B, PTPRZ1, and CSPG3 By similarity. |
| Subcellular location | |
| Tissue specificity | Brain specific. Ref.1 |
| Domain | The EGF-like domains mediate interaction with CNTN1. The fibronectin type-III domains 3-5 mediate interaction with BCAN. The fibronectin type-III domains 1-2 and 7-9 mediate interaction with SCN2B By similarity. |
| Post-translational modification | Contains N-linked oligosaccharides, O-linked sialylated structures and O-linked chondroitin sulfate glycosaminoglycans. Contains N-linked oligosaccharides with a sulfated carbohydrate structure By similarity. O-glycosylated on Thr-36 or Thr-37 with a core 1 or possibly core 8 glycan. |
| Sequence similarities | Belongs to the tenascin family. Contains 5 EGF-like domains. Contains 1 fibrinogen C-terminal domain. Contains 9 fibronectin type-III domains. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q92752-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q92752-2) The sequence of this isoform differs from the canonical sequence as follows: 773-862: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 31 | 31 | Potential | ||||||||
| Chain | 32 – 1358 | 1327 | Tenascin-R | PRO_0000007747 | |||||||
Regions | |||||||||||
| Domain | 188 – 199 | 12 | EGF-like 1 | ||||||||
| Domain | 219 – 230 | 12 | EGF-like 2 | ||||||||
| Domain | 250 – 261 | 12 | EGF-like 3 | ||||||||
| Domain | 281 – 292 | 12 | EGF-like 4 | ||||||||
| Domain | 312 – 323 | 12 | EGF-like 5 | ||||||||
| Domain | 325 – 413 | 89 | Fibronectin type-III 1 | ||||||||
| Domain | 414 – 502 | 89 | Fibronectin type-III 2 | ||||||||
| Domain | 503 – 592 | 90 | Fibronectin type-III 3 | ||||||||
| Domain | 593 – 684 | 92 | Fibronectin type-III 4 | ||||||||
| Domain | 685 – 772 | 88 | Fibronectin type-III 5 | ||||||||
| Domain | 773 – 862 | 90 | Fibronectin type-III 6 | ||||||||
| Domain | 863 – 951 | 89 | Fibronectin type-III 7 | ||||||||
| Domain | 952 – 1039 | 88 | Fibronectin type-III 8 | ||||||||
| Domain | 1040 – 1127 | 88 | Fibronectin type-III 9 | ||||||||
| Domain | 1129 – 1344 | 216 | Fibrinogen C-terminal | ||||||||
| Coiled coil | 127 – 157 | 31 | Potential | ||||||||
| Compositional bias | 155 – 314 | 160 | Cys-rich | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 724 | 1 | Phosphoserine By similarity | ||||||||
| Glycosylation | 36 | 1 | O-linked (GalNAc...) Probable | ||||||||
| Glycosylation | 37 | 1 | O-linked (GalNAc...) Probable | ||||||||
| Glycosylation | 55 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 180 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 198 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 278 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 392 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 470 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 581 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 791 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 874 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1036 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1046 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1261 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 292 ↔ 301 | By similarity | |||||||||
| Disulfide bond | 297 ↔ 312 | By similarity | |||||||||
| Disulfide bond | 314 ↔ 323 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 773 – 862 | 90 | Missing in isoform 2. | VSP_012993 | |||||||
| Natural variant | 17 | 1 | I → V. Ref.1 Ref.2 Corresponds to variant rs859398 [ dbSNP | Ensembl ]. | VAR_021479 | |||||||
| Natural variant | 128 | 1 | A → S. Corresponds to variant rs2239819 [ dbSNP | Ensembl ]. | VAR_021906 | |||||||
| Natural variant | 293 | 1 | G → S. Corresponds to variant rs3752516 [ dbSNP | Ensembl ]. | VAR_021907 | |||||||
| Natural variant | 302 | 1 | S → N. Corresponds to variant rs35736986 [ dbSNP | Ensembl ]. | VAR_055780 | |||||||
| Natural variant | 643 | 1 | R → K. Corresponds to variant rs859427 [ dbSNP | Ensembl ]. | VAR_030737 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 629 | 1 | S → I in CAA66709. Ref.2 | ||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Human tenascin-R: complete primary structure, pre-mRNA alternative splicing and gene localization on chromosome 1q23-q24." Carnemolla B., Leprini A., Borsi L., Querze G., Urbini S., Zardi L. J. Biol. Chem. 271:8157-8160(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), TISSUE SPECIFICITY, VARIANT VAL-17. Tissue: Brain. |
| [2] | "Isolation of the gene for neural cell adhesion molecule tenascin-R and fine mapping relative to loci in 1q25-31." Williams H., Schachner M., Wang B., Goodfellow P., Kenwrick S. Submitted (MAY-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT VAL-17. Tissue: Brain. |
| [3] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "Enrichment of glycopeptides for glycan structure and attachment site identification." Nilsson J., Rueetschi U., Halim A., Hesse C., Carlsohn E., Brinkmalm G., Larson G. Nat. Methods 6:809-811(2009) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT THR-36 AND THR-37, STRUCTURE OF CARBOHYDRATES, MASS SPECTROMETRY. Tissue: Cerebrospinal fluid. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | Z67996 mRNA. Translation: CAA91947.1. X98085 mRNA. Translation: CAA66709.1. AL021919 Genomic DNA. No translation available. AL023285 Genomic DNA. No translation available. AL136530 Genomic DNA. No translation available. Z94057, Z94055 Genomic DNA. Translation: CAI21650.1. Z94055, Z94057 Genomic DNA. Translation: CAI19943.1. |
| IPI | IPI00160552. IPI00554760. |
| RefSeq | NP_003276.3. NM_003285.2. |
| UniGene | Hs.659864. |
3D structure databases | |
| ProteinModelPortal | Q92752. |
| SMR | Q92752. Positions 162-323, 326-1355. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q92752. 1 interaction. |
| STRING | 9606.ENSP00000263525. |
PTM databases | |
| PhosphoSite | Q92752. |
Polymorphism databases | |
| DMDM | 311033534. |
Proteomic databases | |
| PaxDb | Q92752. |
| PRIDE | Q92752. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000263525; ENSP00000263525; ENSG00000116147. ENST00000367674; ENSP00000356646; ENSG00000116147. |
| GeneID | 7143. |
| KEGG | hsa:7143. |
| UCSC | uc001gkp.1. human. |
Organism-specific databases | |
| CTD | 7143. |
| GeneCards | GC01M175291. |
| H-InvDB | HIX0028854. |
| HGNC | HGNC:11953. TNR. |
| HPA | CAB022343. HPA027134. HPA027150. HPA029859. |
| MIM | 601995. gene. |
| neXtProt | NX_Q92752. |
| PharmGKB | PA36642. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG311251. |
| HOGENOM | HOG000234355. |
| HOVERGEN | HBG008949. |
| InParanoid | Q92752. |
| KO | K06252. |
| OMA | KACPCAS. |
| OrthoDB | EOG42FSGP. |
Gene expression databases | |
| ArrayExpress | Q92752. |
| Bgee | Q92752. |
| CleanEx | HS_TNR. |
| Genevestigator | Q92752. |
| GermOnline | ENSG00000116147. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.60.40.10. 9 hits. 3.90.215.10. 1 hit. 4.10.530.10. 1 hit. |
| InterPro | IPR013032. EGF-like_CS. IPR013111. EGF_extracell. IPR014716. Fibrinogen_a/b/g_C_1. IPR014715. Fibrinogen_a/b/g_C_2. IPR002181. Fibrinogen_a/b/g_C_dom. IPR003961. Fibronectin_type3. IPR013783. Ig-like_fold. [Graphical view] |
| Pfam | PF07974. EGF_2. 2 hits. PF00147. Fibrinogen_C. 1 hit. PF00041. fn3. 9 hits. [Graphical view] |
| SMART | SM00186. FBG. 1 hit. SM00060. FN3. 9 hits. [Graphical view] |
| SUPFAM | SSF56496. Fibrinogen_a/b/g_C. 1 hit. SSF49265. FN_III-like. 9 hits. |
| PROSITE | PS00022. EGF_1. 5 hits. PS01186. EGF_2. 4 hits. PS50026. EGF_3. False negative. PS00514. FIBRINOGEN_C_1. False negative. PS51406. FIBRINOGEN_C_2. 1 hit. PS50853. FN3. 9 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 7143. |
| NextBio | 27961. |
| SOURCE | Search... |
Entry information
| Entry name | TENR_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q92752 Secondary accession number(s): C9J563, Q15568, Q5R3G0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
