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Protein

Delta-sarcoglycan

Gene

SGCD

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciZFISH:ENSG00000170624-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Delta-sarcoglycan
Short name:
Delta-SG
Alternative name(s):
35 kDa dystrophin-associated glycoprotein
Short name:
35DAG
Gene namesi
Name:SGCD
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:10807. SGCD.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 35CytoplasmicSequence analysisAdd BLAST35
Transmembranei36 – 56Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini57 – 289ExtracellularSequence analysisAdd BLAST233

GO - Cellular componenti

  • cytoplasm Source: UniProtKB-KW
  • cytoskeleton Source: UniProtKB-SubCell
  • dystrophin-associated glycoprotein complex Source: UniProtKB
  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: ProtInc
  • sarcoglycan complex Source: ProtInc
  • sarcolemma Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cytoplasm, Cytoskeleton, Membrane

Pathology & Biotechi

Involvement in diseasei

Limb-girdle muscular dystrophy 2F (LGMD2F)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionAn autosomal recessive degenerative myopathy initially affecting the proximal limb girdle musculature. Muscle from patients shows a complete loss of delta-sarcoglycan as well as of the others components of the sarcoglycan complex.
See also OMIM:601287
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_010396261E → K in LGMD2F. 1 PublicationCorresponds to variant rs121909297dbSNPEnsembl.1
Cardiomyopathy, dilated 1L (CMD1L)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death.
See also OMIM:606685
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_013181150S → A in CMD1L. 1 PublicationCorresponds to variant rs121909298dbSNPEnsembl.1

Keywords - Diseasei

Cardiomyopathy, Disease mutation, Limb-girdle muscular dystrophy

Organism-specific databases

DisGeNETi6444.
MalaCardsiSGCD.
MIMi601287. phenotype.
606685. phenotype.
OpenTargetsiENSG00000170624.
Orphaneti219. Autosomal recessive limb-girdle muscular dystrophy type 2F.
154. Familial isolated dilated cardiomyopathy.
PharmGKBiPA35718.

Polymorphism and mutation databases

BioMutaiSGCD.
DMDMi212276471.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001752451 – 289Delta-sarcoglycanAdd BLAST289

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi60N-linked (GlcNAc...)Sequence analysis1
Glycosylationi108N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi263 ↔ 288Sequence analysis
Disulfide bondi265 ↔ 281Sequence analysis
Glycosylationi284N-linked (GlcNAc...)Sequence analysis1

Post-translational modificationi

Glycosylated.
Disulfide bonds are present.By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

MaxQBiQ92629.
PaxDbiQ92629.
PeptideAtlasiQ92629.
PRIDEiQ92629.

PTM databases

iPTMnetiQ92629.
PhosphoSitePlusiQ92629.

Expressioni

Tissue specificityi

Most strongly expressed in skeletal and cardiac muscle. Also detected in smooth muscle. Weak expression in brain and lung.

Gene expression databases

BgeeiENSG00000170624.
CleanExiHS_SGCD.
ExpressionAtlasiQ92629. baseline and differential.
GenevisibleiQ92629. HS.

Organism-specific databases

HPAiHPA026969.

Interactioni

Subunit structurei

Interacts with FLNC and DAG1. Cross-link to form 2 major subcomplexes: one consisting of SGCB, SGCD and SGCG and the other consisting of SGCB and SGCD. The association between SGCB and SGCG is particularly strong while SGCA is loosely associated with the other sarcoglycans (By similarity).By similarity

Protein-protein interaction databases

BioGridi112342. 7 interactors.
IntActiQ92629. 5 interactors.
MINTiMINT-119001.
STRINGi9606.ENSP00000338343.

Structurei

3D structure databases

ProteinModelPortaliQ92629.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3950. Eukaryota.
ENOG4111GCH. LUCA.
GeneTreeiENSGT00390000017950.
HOGENOMiHOG000007853.
HOVERGENiHBG008669.
InParanoidiQ92629.
KOiK12563.
OMAiRVMGAEG.
OrthoDBiEOG091G11VY.
PhylomeDBiQ92629.
TreeFamiTF313538.

Family and domain databases

InterProiIPR006875. Sarcoglycan.
IPR027661. SGCD.
[Graphical view]
PANTHERiPTHR12939:SF6. PTHR12939:SF6. 1 hit.
PfamiPF04790. Sarcoglycan_1. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q92629-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MPQEQYTHHR STMPGSVGPQ VYKVGIYGWR KRCLYFFVLL LMILILVNLA
60 70 80 90 100
MTIWILKVMN FTIDGMGNLR ITEKGLKLEG DSEFLQPLYA KEIQSRPGNA
110 120 130 140 150
LYFKSARNVT VNILNDQTKV LTQLITGPKA VEAYGKKFEV KTVSGKLLFS
160 170 180 190 200
ADNNEVVVGA ERLRVLGAEG TVFPKSIETP NVRADPFKEL RLESPTRSLV
210 220 230 240 250
MEAPKGVEIN AEAGNMEATC RTELRLESKD GEIKLDAAKI RLPRLPHGSY
260 270 280
TPTGTRQKVF EICVCANGRL FLSQAGAGST CQINTSVCL
Length:289
Mass (Da):32,071
Last modified:November 4, 2008 - v2
Checksum:iEB775E2427D260B7
GO
Isoform 2 (identifier: Q92629-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MM

Show »
Length:290
Mass (Da):32,203
Checksum:i905E9A9B75D83682
GO
Isoform 3 (identifier: Q92629-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MM
     233-255: IKLDAAKIRLPRLPHGSYTPTGT → VRDEKDRSSKSYSFNRPTLPITG
     256-289: Missing.

Show »
Length:256
Mass (Da):28,750
Checksum:i0C8B9E567462F713
GO

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_01042996R → Q.1 PublicationCorresponds to variant rs1801194dbSNPEnsembl.1
Natural variantiVAR_013181150S → A in CMD1L. 1 PublicationCorresponds to variant rs121909298dbSNPEnsembl.1
Natural variantiVAR_010396261E → K in LGMD2F. 1 PublicationCorresponds to variant rs121909297dbSNPEnsembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0392451M → MM in isoform 2 and isoform 3. 4 Publications1
Alternative sequenceiVSP_039246233 – 255IKLDA…TPTGT → VRDEKDRSSKSYSFNRPTLP ITG in isoform 3. 1 PublicationAdd BLAST23
Alternative sequenceiVSP_039247256 – 289Missing in isoform 3. 1 PublicationAdd BLAST34

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X95191 mRNA. Translation: CAA64490.1.
U58331 mRNA. Translation: AAC50921.1.
AK292794 mRNA. Translation: BAF85483.1.
BX537948 mRNA. Translation: CAD97916.1.
BC020740 mRNA. Translation: AAH20740.1.
CCDSiCCDS47325.1. [Q92629-2]
CCDS47326.1. [Q92629-3]
CCDS47327.1. [Q92629-1]
RefSeqiNP_000328.2. NM_000337.5. [Q92629-2]
NP_001121681.1. NM_001128209.1. [Q92629-1]
NP_758447.1. NM_172244.2. [Q92629-3]
XP_005266023.1. XM_005265966.4. [Q92629-2]
XP_011532923.1. XM_011534621.2. [Q92629-1]
XP_016865212.1. XM_017009723.1. [Q92629-2]
XP_016865213.1. XM_017009724.1. [Q92629-2]
UniGeneiHs.387207.
Hs.644733.

Genome annotation databases

EnsembliENST00000337851; ENSP00000338343; ENSG00000170624. [Q92629-2]
ENST00000435422; ENSP00000403003; ENSG00000170624. [Q92629-1]
ENST00000517913; ENSP00000429378; ENSG00000170624. [Q92629-3]
GeneIDi6444.
KEGGihsa:6444.
UCSCiuc003lwc.5. human. [Q92629-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Web resourcesi

Leiden Muscular Dystrophy pages

SGCD mutations in LGMD2F/CMD1L

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X95191 mRNA. Translation: CAA64490.1.
U58331 mRNA. Translation: AAC50921.1.
AK292794 mRNA. Translation: BAF85483.1.
BX537948 mRNA. Translation: CAD97916.1.
BC020740 mRNA. Translation: AAH20740.1.
CCDSiCCDS47325.1. [Q92629-2]
CCDS47326.1. [Q92629-3]
CCDS47327.1. [Q92629-1]
RefSeqiNP_000328.2. NM_000337.5. [Q92629-2]
NP_001121681.1. NM_001128209.1. [Q92629-1]
NP_758447.1. NM_172244.2. [Q92629-3]
XP_005266023.1. XM_005265966.4. [Q92629-2]
XP_011532923.1. XM_011534621.2. [Q92629-1]
XP_016865212.1. XM_017009723.1. [Q92629-2]
XP_016865213.1. XM_017009724.1. [Q92629-2]
UniGeneiHs.387207.
Hs.644733.

3D structure databases

ProteinModelPortaliQ92629.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi112342. 7 interactors.
IntActiQ92629. 5 interactors.
MINTiMINT-119001.
STRINGi9606.ENSP00000338343.

PTM databases

iPTMnetiQ92629.
PhosphoSitePlusiQ92629.

Polymorphism and mutation databases

BioMutaiSGCD.
DMDMi212276471.

Proteomic databases

MaxQBiQ92629.
PaxDbiQ92629.
PeptideAtlasiQ92629.
PRIDEiQ92629.

Protocols and materials databases

DNASUi6444.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000337851; ENSP00000338343; ENSG00000170624. [Q92629-2]
ENST00000435422; ENSP00000403003; ENSG00000170624. [Q92629-1]
ENST00000517913; ENSP00000429378; ENSG00000170624. [Q92629-3]
GeneIDi6444.
KEGGihsa:6444.
UCSCiuc003lwc.5. human. [Q92629-1]

Organism-specific databases

CTDi6444.
DisGeNETi6444.
GeneCardsiSGCD.
GeneReviewsiSGCD.
HGNCiHGNC:10807. SGCD.
HPAiHPA026969.
MalaCardsiSGCD.
MIMi601287. phenotype.
601411. gene.
606685. phenotype.
neXtProtiNX_Q92629.
OpenTargetsiENSG00000170624.
Orphaneti219. Autosomal recessive limb-girdle muscular dystrophy type 2F.
154. Familial isolated dilated cardiomyopathy.
PharmGKBiPA35718.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3950. Eukaryota.
ENOG4111GCH. LUCA.
GeneTreeiENSGT00390000017950.
HOGENOMiHOG000007853.
HOVERGENiHBG008669.
InParanoidiQ92629.
KOiK12563.
OMAiRVMGAEG.
OrthoDBiEOG091G11VY.
PhylomeDBiQ92629.
TreeFamiTF313538.

Enzyme and pathway databases

BioCyciZFISH:ENSG00000170624-MONOMER.

Miscellaneous databases

ChiTaRSiSGCD. human.
GeneWikiiDelta-sarcoglycan.
SGCD.
GenomeRNAii6444.
PROiQ92629.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000170624.
CleanExiHS_SGCD.
ExpressionAtlasiQ92629. baseline and differential.
GenevisibleiQ92629. HS.

Family and domain databases

InterProiIPR006875. Sarcoglycan.
IPR027661. SGCD.
[Graphical view]
PANTHERiPTHR12939:SF6. PTHR12939:SF6. 1 hit.
PfamiPF04790. Sarcoglycan_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSGCD_HUMAN
AccessioniPrimary (citable) accession number: Q92629
Secondary accession number(s): A8K9S9, Q53XA5, Q99644
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: November 4, 2008
Last modified: November 2, 2016
This is version 154 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.