Q92626 (PXDN_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 120.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Peroxidasin homolog EC=1.11.1.7 Alternative name(s): Melanoma-associated antigen MG50 Vascular peroxidase 1 p53-responsive gene 2 protein | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1479 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Displays low peroxidase activity and is likely to participate in H2O2 metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation. Ref.3 Ref.9 |
| Catalytic activity | 2 phenolic donor + H2O2 = 2 phenoxyl radical of the donor + 2 H2O. Ref.3 Ref.9 |
| Cofactor | Binds 1 calcium ion per subunit By similarity. Ref.3 Binds 1 heme B (iron-protoporphyrin IX) group covalently per subunit. Ref.3 |
| Subcellular location | Secreted › extracellular space › extracellular matrix. Note: Enriched in the peritubular space of fibrotic kidneys. Ref.8 Ref.9 |
| Tissue specificity | Expressed at higher levels in heart, lung, ovary, spleen, intestine and placenta, and at lower levels in liver, colon, pancreas, kidney, thymus, skeletal muscle and prostate. Expressed in tumors such as melanoma, breast cancer, ovarian cancer and glioblastoma. A shorter form probably lacking the signal sequence is found in testis and in EB1 cells undergoing p53/TP53-dependent apoptosis. Ref.1 Ref.2 Ref.3 Ref.9 |
| Developmental stage | Expressed in fetal liver and spleen. Ref.2 |
| Induction | By TGFB1 in fibroblasts and up-regulated in apoptotic cells. Ref.1 Ref.9 |
| Sequence similarities | Belongs to the peroxidase family. XPO subfamily. Contains 4 Ig-like C2-type (immunoglobulin-like) domains. Contains 4 LRR (leucine-rich) repeats. Contains 1 LRRCT domain. Contains 1 LRRNT domain. Contains 1 VWFC domain. |
| Biophysicochemical properties | Kinetic parameters: KM=0.15 mM for H2O2 Ref.3 |
| Sequence caution | The sequence AAF06354.1 differs from that shown. Reason: Erroneous initiation. The sequence BAA13219.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform 1 (identifier: Q92626-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q92626-2) The sequence of this isoform differs from the canonical sequence as follows: 703-727: YHYNDLVSPQYLNLIANLSGCTAHR → QCQSLFFLLHGLSNGVEHASVKSHS 728-1479: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 26 | 26 | Potential | ||||||||
| Chain | 27 – 1479 | 1453 | Peroxidasin homolog | PRO_0000319619 | |||||||
Regions | |||||||||||
| Domain | 27 – 63 | 37 | LRRNT | ||||||||
| Repeat | 87 – 108 | 22 | LRR 1 | ||||||||
| Repeat | 111 – 132 | 22 | LRR 2 | ||||||||
| Repeat | 135 – 156 | 22 | LRR 3 | ||||||||
| Repeat | 159 – 180 | 22 | LRR 4 | ||||||||
| Domain | 192 – 245 | 54 | LRRCT | ||||||||
| Domain | 246 – 332 | 87 | Ig-like C2-type 1 | ||||||||
| Domain | 342 – 428 | 87 | Ig-like C2-type 2 | ||||||||
| Domain | 433 – 520 | 88 | Ig-like C2-type 3 | ||||||||
| Domain | 521 – 610 | 90 | Ig-like C2-type 4 | ||||||||
| Domain | 1413 – 1471 | 59 | VWFC | ||||||||
Sites | |||||||||||
| Active site | 827 | 1 | Proton acceptor By similarity | ||||||||
| Metal binding | 828 | 1 | Calcium By similarity | ||||||||
| Metal binding | 907 | 1 | Calcium By similarity | ||||||||
| Metal binding | 909 | 1 | Calcium; via carbonyl oxygen By similarity | ||||||||
| Metal binding | 911 | 1 | Calcium By similarity | ||||||||
| Metal binding | 913 | 1 | Calcium By similarity | ||||||||
| Metal binding | 1074 | 1 | Iron (heme axial ligand) By similarity | ||||||||
| Binding site | 826 | 1 | Heme (covalent; via 2 links) By similarity | ||||||||
| Binding site | 980 | 1 | Heme (covalent; via 2 links) By similarity | ||||||||
| Site | 977 | 1 | Transition state stabilizer By similarity | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 1176 | 1 | Phosphotyrosine Ref.7 | ||||||||
| Modified residue | 1180 | 1 | Phosphoserine Ref.7 | ||||||||
| Glycosylation | 640 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 699 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 719 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 731 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 865 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1178 | 1 | N-linked (GlcNAc...) Ref.10 | ||||||||
| Glycosylation | 1280 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1368 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1425 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 267 ↔ 317 | By similarity | |||||||||
| Disulfide bond | 363 ↔ 412 | By similarity | |||||||||
| Disulfide bond | 454 ↔ 502 | By similarity | |||||||||
| Disulfide bond | 546 ↔ 594 | By similarity | |||||||||
| Disulfide bond | 732 ↔ 748 | By similarity | |||||||||
| Disulfide bond | 847 ↔ 857 | By similarity | |||||||||
| Disulfide bond | 851 ↔ 875 | By similarity | |||||||||
| Disulfide bond | 959 ↔ 970 | By similarity | |||||||||
| Disulfide bond | 1177 ↔ 1234 | By similarity | |||||||||
| Disulfide bond | 1275 ↔ 1301 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 703 – 727 | 25 | YHYND…CTAHR → QCQSLFFLLHGLSNGVEHAS VKSHS in isoform 2. | VSP_031516 | |||||||
| Alternative sequence | 728 – 1479 | 752 | Missing in isoform 2. | VSP_031517 | |||||||
| Natural variant | 1198 | 1 | R → Q. Corresponds to variant rs6723697 [ dbSNP | Ensembl ]. | VAR_050487 | |||||||
| Natural variant | 1261 | 1 | Q → R. Corresponds to variant rs6723697 [ dbSNP | Ensembl ]. | VAR_039048 | |||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Isolation of differentially expressed cDNAs from p53-dependent apoptotic cells: activation of the human homologue of the Drosophila peroxidasin gene." Horikoshi N., Cong J., Kley N., Shenk T. Biochem. Biophys. Res. Commun. 261:864-869(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INDUCTION, TISSUE SPECIFICITY. |
| [2] | "A novel melanoma gene (MG50) encoding the interleukin 1 receptor antagonist and six epitopes recognized by human cytolytic T lymphocytes." Mitchell M.S., Kan-Mitchell J., Minev B., Edman C., Deans R.J. Cancer Res. 60:6448-6456(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, DEVELOPMENTAL STAGE. |
| [3] | "Identification and characterization of VPO1, a new animal heme-containing peroxidase." Cheng G., Salerno J.C., Cao Z., Pagano P.J., Lambeth J.D. Free Radic. Biol. Med. 45:1682-1694(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), 3D-STRUCTURE MODELING, FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, HEME COFACTOR, TISSUE SPECIFICITY. |
| [4] | "Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain." Nagase T., Seki N., Ishikawa K., Ohira M., Kawarabayasi Y., Ohara O., Tanaka A., Kotani H., Miyajima N., Nomura N. DNA Res. 3:321-329(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Bone marrow. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-1479 (ISOFORM 2). Tissue: Chondrosarcoma. |
| [7] | "Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography." Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J. Proteomics 8:1346-1361(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-1176 AND SER-1180, MASS SPECTROMETRY. Tissue: Liver. |
| [8] | Cheng G. Unpublished observations (FEB-2008) Cited for: SUBCELLULAR LOCATION. |
| [9] | "Peroxidasin is secreted and incorporated into the extracellular matrix of myofibroblasts and fibrotic kidney." Peterfi Z., Donko A., Orient A., Sum A., Prokai A., Molnar B., Vereb Z., Rajnavolgyi E., Kovacs K.J., Muller V., Szabo A.J., Geiszt M. Am. J. Pathol. 175:725-735(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION BY TGFB1. |
| [10] | "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry." Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H. J. Proteome Res. 8:651-661(2009) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-1178, MASS SPECTROMETRY. Tissue: Liver. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF200348 mRNA. Translation: AAF06354.1. Different initiation. EF090903 mRNA. Translation: ABO25865.1. D86983 mRNA. Translation: BAA13219.1. Different initiation. CH471053 Genomic DNA. Translation: EAX01084.1. CH471053 Genomic DNA. Translation: EAX01085.1. BC098579 mRNA. Translation: AAH98579.1. |
| IPI | IPI00016112. IPI00791587. |
| RefSeq | NP_036425.1. NM_012293.1. |
| UniGene | Hs.332197. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1D5L based on UniProtKB P05164. |
| ProteinModelPortal | Q92626. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q92626. 1 interaction. |
| STRING | 9606.ENSP00000252804. |
Protein family/group databases | |
| PeroxiBase | 3355. HsPxd01. |
PTM databases | |
| PhosphoSite | Q92626. |
Polymorphism databases | |
| DMDM | 172045828. |
Proteomic databases | |
| PaxDb | Q92626. |
| PRIDE | Q92626. |
Protocols and materials databases | |
| DNASU | 7837. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000252804; ENSP00000252804; ENSG00000130508. |
| GeneID | 7837. |
| KEGG | hsa:7837. |
| UCSC | uc002qxa.3. human. uc002qxb.1. human. |
Organism-specific databases | |
| CTD | 7837. |
| GeneCards | GC02M001635. |
| HGNC | HGNC:14966. PXDN. |
| HPA | HPA012375. |
| MIM | 605158. gene. |
| neXtProt | NX_Q92626. |
| Orphanet | 289499. Congenital cataract microcornea with corneal opacity. |
| PharmGKB | PA128394535. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG262194. |
| HOGENOM | HOG000016084. |
| HOVERGEN | HBG108312. |
| InParanoid | Q92626. |
| OMA | EPVITWN. |
| OrthoDB | EOG4J1179. |
Gene expression databases | |
| ArrayExpress | Q92626. |
| Bgee | Q92626. |
| CleanEx | HS_PRG2. HS_PXDN. |
| Genevestigator | Q92626. |
Family and domain databases | |
| Gene3D | 1.10.640.10. 2 hits. 2.60.40.10. 4 hits. |
| InterPro | IPR000483. Cys-rich_flank_reg_C. IPR010255. Haem_peroxidase. IPR002007. Haem_peroxidase_animal. IPR019791. Haem_peroxidase_animal_subgr. IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003598. Ig_sub2. IPR001611. Leu-rich_rpt. IPR003591. Leu-rich_rpt_typical-subtyp. IPR000372. LRR-contain_N. IPR001007. VWF_C. [Graphical view] |
| Pfam | PF03098. An_peroxidase. 1 hit. PF07679. I-set. 4 hits. PF00093. VWC. 1 hit. [Graphical view] |
| PRINTS | PR00457. ANPEROXIDASE. |
| SMART | SM00408. IGc2. 4 hits. SM00369. LRR_TYP. 4 hits. SM00082. LRRCT. 1 hit. SM00013. LRRNT. 1 hit. SM00214. VWC. 1 hit. [Graphical view] |
| SUPFAM | SSF48113. Peroxidase_super. 1 hit. |
| PROSITE | PS50835. IG_LIKE. 4 hits. PS51450. LRR. 5 hits. PS00435. PEROXIDASE_1. False negative. PS00436. PEROXIDASE_2. False negative. PS50292. PEROXIDASE_3. 1 hit. PS01208. VWFC_1. 1 hit. PS50184. VWFC_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PXDN. human. |
| GenomeRNAi | 7837. |
| NextBio | 30238. |
| SOURCE | Search... |
Entry information
| Entry name | PXDN_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q92626 Secondary accession number(s): A8QM65, D6W4Y0, Q4KMG2 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
