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Q924W3 (Q924W3_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:Itga6 RGD 621633
Synonyms:inta6 EMBL CAC38095.1
OrganismRattus norvegicus (Rat) EMBL CAC38095.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length99 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   DomainRepeat SAAS SAAS013519
   Molecular functionIntegrin EMBL CAC38095.1
Gene Ontology (GO)
   Biological_processbrown fat cell differentiation

Inferred from electronic annotation. Source: Ensembl

cell adhesion mediated by integrin

Inferred from electronic annotation. Source: Ensembl

cell-matrix adhesion

Inferred from electronic annotation. Source: Ensembl

cellular response to extracellular stimulus

Inferred from electronic annotation. Source: Ensembl

cellular response to organic cyclic compound

Inferred from expression pattern Ref.2. Source: RGD

filopodium assembly

Inferred from electronic annotation. Source: Ensembl

integrin-mediated signaling pathway

Inferred from electronic annotation. Source: UniProtKB-KW

leukocyte migration

Inferred from electronic annotation. Source: Ensembl

negative regulation of extrinsic apoptotic signaling pathway

Inferred from electronic annotation. Source: Ensembl

odontogenesis of dentin-containing tooth

Inferred from electronic annotation. Source: Ensembl

positive regulation of apoptotic process

Inferred from electronic annotation. Source: Ensembl

positive regulation of cell-cell adhesion

Inferred from electronic annotation. Source: Ensembl

positive regulation of cell-substrate adhesion

Inferred from mutant phenotype Ref.2. Source: RGD

positive regulation of phosphorylation

Inferred from electronic annotation. Source: Ensembl

positive regulation of transcription from RNA polymerase II promoter

Inferred from electronic annotation. Source: Ensembl

single organismal cell-cell adhesion

Inferred from mutant phenotype PubMed 16557522. Source: RGD

   Cellular_componentalpha6-beta4 integrin complex

Inferred from direct assay Ref.2. Source: RGD

basal plasma membrane

Inferred from electronic annotation. Source: Ensembl

basement membrane

Inferred from electronic annotation. Source: Ensembl

cell-cell adherens junction

Inferred from direct assay PubMed 16608848. Source: RGD

external side of plasma membrane

Inferred from electronic annotation. Source: Ensembl

filopodium

Inferred from direct assay Ref.2. Source: RGD

hemidesmosome

Inferred from electronic annotation. Source: Ensembl

   Molecular_functionlaminin binding

Inferred from physical interaction PubMed 16608848. Source: RGD

protein complex binding

Inferred from direct assay Ref.2. Source: RGD

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue991 EMBL CAC38095.1

Sequences

Sequence LengthMass (Da)Tools
Q924W3 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 3F0A90BB12E79CE1

FASTA9910,765
        10         20         30         40         50         60 
MAVAGQLCLL YLSAGLLARL STAFNLDTRE DNVIRKSGDP GSLFGFSLAM HWQLQPEDKR 

        70         80         90 
LLLVGAPRAE ALPLQKANRT GGLYSCDITS RGPCTRIVF 

« Hide

References

[1]Herlevsen M.C.
Thesis (2001), Department of Bio und Geowissenschaften, Univertsity of Karlsruhe, Karlsruhe, Germany
Cited for: NUCLEOTIDE SEQUENCE.
[2]"The association of the tetraspanin D6.1A with the alpha6beta4 integrin supports cell motility and liver metastasis formation."
Herlevsen M., Schmidt D.S., Miyazaki K., Zoller M.
J. Cell Sci. 116:4373-4390(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ312933 mRNA. Translation: CAC38095.1.
RefSeqNP_446177.1. NM_053725.1.
UniGeneRn.22382.

3D structure databases

ProteinModelPortalQ924W3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ924W3. 1 interaction.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID114517.
KEGGrno:114517.
UCSCRGD:621633. rat.

Organism-specific databases

CTD3655.
RGD621633. Itga6.

Phylogenomic databases

HOGENOMHOG000015786.
InParanoidQ924W3.
KOK06485.

Gene expression databases

GenevestigatorQ924W3.

Family and domain databases

InterProIPR013519. Int_alpha_beta-p.
[Graphical view]
SMARTSM00191. Int_alpha. 1 hit.
[Graphical view]
PROSITEPS51470. FG_GAP. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio618643.

Entry information

Entry nameQ924W3_RAT
AccessionPrimary (citable) accession number: Q924W3
Entry history
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: July 9, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)