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Protein

Synaptobrevin homolog 1

Gene

syb1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Protein inferred from homologyi

Functioni

Involved in membrane trafficking during cytokinesis and cell elongation.1 Publication

GO - Molecular functioni

GO - Biological processi

  • endocytosis Source: PomBase
  • exocytosis Source: GO_Central
  • intracellular protein transport Source: PomBase
  • vesicle fusion Source: GO_Central
  • vesicle-mediated transport Source: PomBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Synaptobrevin homolog 1
Gene namesi
Name:syb1
ORF Names:SPAC6G9.11
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC6G9.11.
PomBaseiSPAC6G9.11. syb1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 9797CytoplasmicSequence analysisAdd
BLAST
Transmembranei98 – 11821Helical; Anchor for type IV membrane proteinSequence analysisAdd
BLAST
Topological domaini119 – 1213VesicularSequence analysis

GO - Cellular componenti

  • cell cortex of cell tip Source: PomBase
  • cell division site Source: PomBase
  • cell tip Source: PomBase
  • cytoplasm Source: PomBase
  • cytoplasmic vesicle membrane Source: PomBase
  • endoplasmic reticulum Source: PomBase
  • Golgi apparatus Source: PomBase
  • integral component of membrane Source: UniProtKB-KW
  • SNARE complex Source: GO_Central
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 121121Synaptobrevin homolog 1PRO_0000206746Add
BLAST

Proteomic databases

MaxQBiQ92356.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi278225. 5 interactions.
MINTiMINT-4701259.

Structurei

3D structure databases

ProteinModelPortaliQ92356.
SMRiQ92356. Positions 31-89.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini31 – 9161v-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the synaptobrevin family.Curated
Contains 1 v-SNARE coiled-coil homology domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000042711.
InParanoidiQ92356.
KOiK08513.
OMAiVPYDPYI.
OrthoDBiEOG092C4MCV.
PhylomeDBiQ92356.

Family and domain databases

Gene3Di1.10.3840.10. 1 hit.
InterProiIPR001388. Synaptobrevin.
IPR016444. Synaptobrevin/VAMP.
[Graphical view]
PfamiPF00957. Synaptobrevin. 1 hit.
[Graphical view]
PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
PRINTSiPR00219. SYNAPTOBREVN.
PROSITEiPS00417. SYNAPTOBREVIN. 1 hit.
PS50892. V_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q92356-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEPYDPYIP AEPSAAVRSG NAAASSTPNM KTAAIQQQID DTVGIMRENI
60 70 80 90 100
SKVSERGERL DSLQDKTDNL AVSAQGFRRG ANRVRKKMWW KDMRMRLCII
110 120
IGIIILLVVI IVPIATKFHG K
Length:121
Mass (Da):13,469
Last modified:February 1, 1997 - v1
Checksum:iD10029CA0341D4DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB03613.1.
PIRiT39073.
RefSeqiNP_594120.1. NM_001019544.2.

Genome annotation databases

EnsemblFungiiSPAC6G9.11.1; SPAC6G9.11.1:pep; SPAC6G9.11.
GeneIDi2541731.
KEGGispo:SPAC6G9.11.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB03613.1.
PIRiT39073.
RefSeqiNP_594120.1. NM_001019544.2.

3D structure databases

ProteinModelPortaliQ92356.
SMRiQ92356. Positions 31-89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi278225. 5 interactions.
MINTiMINT-4701259.

Proteomic databases

MaxQBiQ92356.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC6G9.11.1; SPAC6G9.11.1:pep; SPAC6G9.11.
GeneIDi2541731.
KEGGispo:SPAC6G9.11.

Organism-specific databases

EuPathDBiFungiDB:SPAC6G9.11.
PomBaseiSPAC6G9.11. syb1.

Phylogenomic databases

HOGENOMiHOG000042711.
InParanoidiQ92356.
KOiK08513.
OMAiVPYDPYI.
OrthoDBiEOG092C4MCV.
PhylomeDBiQ92356.

Miscellaneous databases

PROiQ92356.

Family and domain databases

Gene3Di1.10.3840.10. 1 hit.
InterProiIPR001388. Synaptobrevin.
IPR016444. Synaptobrevin/VAMP.
[Graphical view]
PfamiPF00957. Synaptobrevin. 1 hit.
[Graphical view]
PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
PRINTSiPR00219. SYNAPTOBREVN.
PROSITEiPS00417. SYNAPTOBREVIN. 1 hit.
PS50892. V_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSYB1_SCHPO
AccessioniPrimary (citable) accession number: Q92356
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.