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Protein

Smoothelin

Gene

Smtn

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Structural protein of the cytoskeleton.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Smoothelin
Gene namesi
Name:Smtn
Synonyms:Smsmo
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1354727. Smtn.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 923922SmoothelinPRO_0000318593Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanineBy similarity
Modified residuei299 – 2991PhosphoserineBy similarity
Modified residuei301 – 3011PhosphoserineBy similarity
Modified residuei304 – 3041PhosphoserineBy similarity
Modified residuei340 – 3401PhosphoserineBy similarity
Modified residuei359 – 3591PhosphothreonineBy similarity
Modified residuei372 – 3721PhosphothreonineBy similarity
Modified residuei501 – 5011PhosphoserineBy similarity
Modified residuei574 – 5741PhosphoserineBy similarity
Modified residuei641 – 6411PhosphoserineCombined sources
Modified residuei735 – 7351PhosphoserineBy similarity
Isoform L2 (identifier: Q921U8-2)
Modified residuei372 – 3721PhosphothreonineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ921U8.
MaxQBiQ921U8.
PaxDbiQ921U8.
PRIDEiQ921U8.

PTM databases

iPTMnetiQ921U8.
PhosphoSiteiQ921U8.

Expressioni

Gene expression databases

BgeeiQ921U8.
CleanExiMM_SMTN.
ExpressionAtlasiQ921U8. baseline and differential.
GenevisibleiQ921U8. MM.

Interactioni

Protein-protein interaction databases

BioGridi205923. 1 interaction.
IntActiQ921U8. 3 interactions.
MINTiMINT-4130954.
STRINGi10090.ENSMUSP00000020721.

Structurei

3D structure databases

ProteinModelPortaliQ921U8.
SMRiQ921U8. Positions 800-911.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini805 – 908104CHPROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili24 – 8966Sequence analysisAdd
BLAST
Coiled coili601 – 62828Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi194 – 27279Pro-richAdd
BLAST
Compositional biasi367 – 39125Ser-richAdd
BLAST
Compositional biasi645 – 70965Thr-richAdd
BLAST
Compositional biasi697 – 74044Ser-richAdd
BLAST

Sequence similaritiesi

Belongs to the smoothelin family.Curated
Contains 1 CH (calponin-homology) domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG4678. Eukaryota.
COG5069. LUCA.
GeneTreeiENSGT00760000118856.
HOVERGENiHBG076678.
InParanoidiQ921U8.
OrthoDBiEOG7C2R13.
TreeFamiTF316716.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
InterProiIPR001715. CH-domain.
IPR022189. SMTN.
[Graphical view]
PfamiPF00307. CH. 1 hit.
PF12510. Smoothelin. 3 hits.
[Graphical view]
SMARTiSM00033. CH. 1 hit.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS50021. CH. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform L1 (identifier: Q921U8-1) [UniParc]FASTAAdd to basket

Also known as: B

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MADEALAGLD EGALRKLLEV TADLAERRRI RSAIRELQRQ ELEREEEALA
60 70 80 90 100
SKRFRAERQD NKENWLHSQQ REAEQQAALA RLAGRLESMN DVEELTTLLR
110 120 130 140 150
SAGEYEERKL IRAAIRRVRA QEIKAATLAG RLCSRLPSSG PREDSRRQAA
160 170 180 190 200
HTLDPGKVPE PEQQEQQTEV LEPTPTPEDT SQDVTTVTLL LRAPPGGRPS
210 220 230 240 250
SPASPHNSPT SASPEPLLEP AGAQCPAVEA PVSSEPLPHP SEAPSPEPPM
260 270 280 290 300
SPVPSSSRGR VISKPLPGPT EPSDTLDSIR GFSNTKRADP SETKSCQRSL
310 320 330 340 350
SVLSPRQPTP NREPTSLAGP SQFRRVGSVR DRVQKFTSDS PVVARLQDGP
360 370 380 390 400
PRTALASPTP TRLPGPSLIS TTPASSSSSN SSSPSPSDTS SHKKQRELAH
410 420 430 440 450
SLAELQSCPQ EEGPGGRGLA LRSLENRAGG PKPCSEEPST PPPVAVGTGE
460 470 480 490 500
PGGSMKTTFT IEIKDGRGQA STGRVLLPTG NQRAELTLGL RAPPTLLSTS
510 520 530 540 550
SGGKNTITHI SNPGTVTRLG SVTHVTTFSH ASPGNRGGCN FKMEPDPAEP
560 570 580 590 600
PSTTVEAANG AEQARVDKGP EGRSPLSAEE LTAIEDEGVL DKMLDQTTNF
610 620 630 640 650
EERKLIRAAL RELRQRKRDQ RDKERERRLR EARARPGESR SNVATETTTR
660 670 680 690 700
HSQRAADGST VGTVTKTERL VHSNDGTQTA RTTTVESSFM RRLENGSSSS
710 720 730 740 750
STTTTTVQTK SFSSSSSSSS SKKMGSIFDR EDQTSSRPGS LAALERRQAE
760 770 780 790 800
KKKELMKAQS LPKTSASQAR KAMIEKLEKE GSAGGPGTPR TAVQRSTSFG
810 820 830 840 850
VPNANSIKQM LLDWCRAKTR GYEHVDIQNF SSSWSDGMAF CALVHNFFPE
860 870 880 890 900
AFDYGQLSPQ NRRQNFEMAF SSAEMLVDCV PLVEVEDMMI MGKKPDPKCV
910 920
FTYVQSLYNH LRRHELRLRG KNV
Length:923
Mass (Da):100,289
Last modified:February 5, 2008 - v2
Checksum:i2E70E413C8B487C7
GO
Isoform L2 (identifier: Q921U8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     875-923: MLVDCVPLVE...HELRLRGKNV → THADCPQLLD...QKGLVKTKKS

Show »
Length:921
Mass (Da):100,135
Checksum:i019B4D29FC07BACF
GO
Isoform S1 (identifier: Q921U8-3) [UniParc]FASTAAdd to basket

Also known as: A

The sequence of this isoform differs from the canonical sequence as follows:
     1-454: Missing.

Show »
Length:469
Mass (Da):51,657
Checksum:i7DB57BDE4A611CA1
GO
Isoform S2 (identifier: Q921U8-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-454: Missing.
     875-923: MLVDCVPLVE...HELRLRGKNV → THADCPQLLD...QKGLVKTKKS

Show »
Length:467
Mass (Da):51,503
Checksum:iCE56CFFC6761D5A4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti173 – 1731P → S in AAD29628 (PubMed:10965129).Curated
Sequence conflicti173 – 1731P → S in AAF01480 (PubMed:10023782).Curated
Sequence conflicti173 – 1731P → S in CAA09076 (PubMed:10023782).Curated
Sequence conflicti173 – 1731P → S in AAF25577 (Ref. 3) Curated
Sequence conflicti173 – 1731P → S in AAF25578 (Ref. 3) Curated
Sequence conflicti379 – 3791Missing in AAH69839 (PubMed:15489334).Curated
Sequence conflicti379 – 3791Missing in AAH69836 (PubMed:15489334).Curated
Sequence conflicti379 – 3791Missing in AAH66192 (PubMed:15489334).Curated
Sequence conflicti441 – 4411P → Q in BAE41853 (PubMed:16141072).Curated
Sequence conflicti448 – 4481T → N in BAC27188 (PubMed:16141072).Curated
Sequence conflicti450 – 4501E → G in AAH69839 (PubMed:15489334).Curated
Sequence conflicti450 – 4501E → G in AAH69836 (PubMed:15489334).Curated
Sequence conflicti450 – 4501E → G in AAH66192 (PubMed:15489334).Curated
Sequence conflicti711 – 7111S → N in AAD29628 (PubMed:10965129).Curated
Sequence conflicti711 – 7111S → N in AAF67392 (PubMed:10965129).Curated
Sequence conflicti711 – 7111S → N in AAF01480 (PubMed:10023782).Curated
Sequence conflicti711 – 7111S → N in CAA09076 (PubMed:10023782).Curated
Sequence conflicti711 – 7111S → N in AAF25577 (Ref. 3) Curated
Sequence conflicti711 – 7111S → N in AAF25578 (Ref. 3) Curated
Sequence conflicti711 – 7111S → N in AAF25579 (Ref. 3) Curated
Sequence conflicti711 – 7111S → N in AAF25580 (Ref. 3) Curated
Sequence conflicti756 – 7561M → V in AAH69839 (PubMed:15489334).Curated
Sequence conflicti756 – 7561M → V in AAH69836 (PubMed:15489334).Curated
Sequence conflicti756 – 7561M → V in AAH66192 (PubMed:15489334).Curated
Sequence conflicti837 – 8371G → R in AAD29628 (PubMed:10965129).Curated
Sequence conflicti837 – 8371G → R in AAF67392 (PubMed:10965129).Curated
Sequence conflicti837 – 8371G → R in AAF01480 (PubMed:10023782).Curated
Sequence conflicti837 – 8371G → R in CAA09076 (PubMed:10023782).Curated
Sequence conflicti837 – 8371G → R in AAF25577 (Ref. 3) Curated
Sequence conflicti837 – 8371G → R in AAF25578 (Ref. 3) Curated
Sequence conflicti837 – 8371G → R in AAF25579 (Ref. 3) Curated
Sequence conflicti837 – 8371G → R in AAF25580 (Ref. 3) Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 454454Missing in isoform S1 and isoform S2. CuratedVSP_031243Add
BLAST
Alternative sequencei875 – 92349MLVDC…RGKNV → THADCPQLLDTEDMVRLREP DWKCVYTYIQEFYRCLVQKG LVKTKKS in isoform L2 and isoform S2. 3 PublicationsVSP_031244Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF218834
, AF116517, AF116518, AF195524, AF195525, AF218829, AF218830, AF218831, AF218832, AF218833 Genomic DNA. Translation: AAD29628.2.
AF218834
, AF116518, AF195525, AF218830, AF218831, AF218832, AF218833 Genomic DNA. Translation: AAF67392.1.
AF064236 mRNA. Translation: AAF01480.1.
AJ010305 mRNA. Translation: CAA09076.1.
AF132449 Genomic DNA. Translation: AAF25577.2.
AF132449 Genomic DNA. Translation: AAF25578.2.
AF132449 Genomic DNA. Translation: AAF25579.2.
AF132449 Genomic DNA. Translation: AAF25580.2.
AK030932 mRNA. Translation: BAC27188.1.
AK170516 mRNA. Translation: BAE41853.1.
BC010599 mRNA. Translation: AAH10599.1.
BC066192 mRNA. Translation: AAH66192.1.
BC069836 mRNA. Translation: AAH69836.1.
BC069839 mRNA. Translation: AAH69839.1.
CCDSiCCDS24366.1. [Q921U8-2]
CCDS70129.1. [Q921U8-1]
RefSeqiNP_001152756.1. NM_001159284.1. [Q921U8-2]
NP_001271356.1. NM_001284427.1. [Q921U8-1]
NP_001271357.1. NM_001284428.1. [Q921U8-2]
NP_001271358.1. NM_001284429.1.
NP_038898.2. NM_013870.3. [Q921U8-2]
UniGeneiMm.188516.

Genome annotation databases

EnsembliENSMUST00000020721; ENSMUSP00000020721; ENSMUSG00000020439. [Q921U8-2]
ENSMUST00000075118; ENSMUSP00000074621; ENSMUSG00000020439. [Q921U8-1]
ENSMUST00000170588; ENSMUSP00000133155; ENSMUSG00000020439. [Q921U8-2]
GeneIDi29856.
KEGGimmu:29856.
UCSCiuc007htf.2. mouse. [Q921U8-2]
uc007hti.2. mouse. [Q921U8-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF218834
, AF116517, AF116518, AF195524, AF195525, AF218829, AF218830, AF218831, AF218832, AF218833 Genomic DNA. Translation: AAD29628.2.
AF218834
, AF116518, AF195525, AF218830, AF218831, AF218832, AF218833 Genomic DNA. Translation: AAF67392.1.
AF064236 mRNA. Translation: AAF01480.1.
AJ010305 mRNA. Translation: CAA09076.1.
AF132449 Genomic DNA. Translation: AAF25577.2.
AF132449 Genomic DNA. Translation: AAF25578.2.
AF132449 Genomic DNA. Translation: AAF25579.2.
AF132449 Genomic DNA. Translation: AAF25580.2.
AK030932 mRNA. Translation: BAC27188.1.
AK170516 mRNA. Translation: BAE41853.1.
BC010599 mRNA. Translation: AAH10599.1.
BC066192 mRNA. Translation: AAH66192.1.
BC069836 mRNA. Translation: AAH69836.1.
BC069839 mRNA. Translation: AAH69839.1.
CCDSiCCDS24366.1. [Q921U8-2]
CCDS70129.1. [Q921U8-1]
RefSeqiNP_001152756.1. NM_001159284.1. [Q921U8-2]
NP_001271356.1. NM_001284427.1. [Q921U8-1]
NP_001271357.1. NM_001284428.1. [Q921U8-2]
NP_001271358.1. NM_001284429.1.
NP_038898.2. NM_013870.3. [Q921U8-2]
UniGeneiMm.188516.

3D structure databases

ProteinModelPortaliQ921U8.
SMRiQ921U8. Positions 800-911.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi205923. 1 interaction.
IntActiQ921U8. 3 interactions.
MINTiMINT-4130954.
STRINGi10090.ENSMUSP00000020721.

PTM databases

iPTMnetiQ921U8.
PhosphoSiteiQ921U8.

Proteomic databases

EPDiQ921U8.
MaxQBiQ921U8.
PaxDbiQ921U8.
PRIDEiQ921U8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000020721; ENSMUSP00000020721; ENSMUSG00000020439. [Q921U8-2]
ENSMUST00000075118; ENSMUSP00000074621; ENSMUSG00000020439. [Q921U8-1]
ENSMUST00000170588; ENSMUSP00000133155; ENSMUSG00000020439. [Q921U8-2]
GeneIDi29856.
KEGGimmu:29856.
UCSCiuc007htf.2. mouse. [Q921U8-2]
uc007hti.2. mouse. [Q921U8-1]

Organism-specific databases

CTDi6525.
MGIiMGI:1354727. Smtn.

Phylogenomic databases

eggNOGiKOG4678. Eukaryota.
COG5069. LUCA.
GeneTreeiENSGT00760000118856.
HOVERGENiHBG076678.
InParanoidiQ921U8.
OrthoDBiEOG7C2R13.
TreeFamiTF316716.

Miscellaneous databases

ChiTaRSiSmtn. mouse.
PROiQ921U8.
SOURCEiSearch...

Gene expression databases

BgeeiQ921U8.
CleanExiMM_SMTN.
ExpressionAtlasiQ921U8. baseline and differential.
GenevisibleiQ921U8. MM.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
InterProiIPR001715. CH-domain.
IPR022189. SMTN.
[Graphical view]
PfamiPF00307. CH. 1 hit.
PF12510. Smoothelin. 3 hits.
[Graphical view]
SMARTiSM00033. CH. 1 hit.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS50021. CH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structure and chromosome location of Smtn, the mouse smoothelin gene."
    Rensen S., Merkx G., Doevendans P., Geurts Van Kessel A., van Eys G.J.J.M.
    Cytogenet. Cell Genet. 89:225-229(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], ALTERNATIVE SPLICING.
    Strain: L129.
  2. "A novel isoform of the smooth muscle cell differentiation marker smoothelin."
    Kraemer J., Aguirre-Arteta A.M., Thiel C., Gross M.C., Dietz R., Cardoso M.C., Leonhardt H.
    J. Mol. Med. 77:294-298(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS L1 AND L2).
    Strain: 129.
    Tissue: Heart.
  3. "Mouse smoothelin gene structure and its splicing variants."
    Kraemer J., Cardoso M.C., Gross C.M., Dietz R., Leonhardt H.
    Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], ALTERNATIVE SPLICING.
    Strain: 129.
  4. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM L2).
    Strain: C57BL/6J and NOD.
    Tissue: Thymus.
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM L2).
    Strain: C57BL/6J and FVB/N.
    Tissue: Blastocyst, Embryo and Mammary tumor.
  6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-641, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Heart and Kidney.

Entry informationi

Entry nameiSMTN_MOUSE
AccessioniPrimary (citable) accession number: Q921U8
Secondary accession number(s): Q3TCV2
, Q6NSW1, Q8CD93, Q9JHG8, Q9JLU7, Q9R0D0, Q9R253, Q9Z0Q2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: February 5, 2008
Last modified: June 8, 2016
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.