true
2003-03-28
2024-03-27
164
DDX27_MOUSE
The transcriptional landscape of the mammalian genome.
Carninci P.
Kasukawa T.
Katayama S.
Gough J.
Frith M.C.
Maeda N.
Oyama R.
Ravasi T.
Lenhard B.
Wells C.
Kodzius R.
Shimokawa K.
Bajic V.B.
Brenner S.E.
Batalov S.
Forrest A.R.
Zavolan M.
Davis M.J.
Wilming L.G.
Aidinis V.
Allen J.E.
Ambesi-Impiombato A.
Apweiler R.
Aturaliya R.N.
Bailey T.L.
Bansal M.
Baxter L.
Beisel K.W.
Bersano T.
Bono H.
Chalk A.M.
Chiu K.P.
Choudhary V.
Christoffels A.
Clutterbuck D.R.
Crowe M.L.
Dalla E.
Dalrymple B.P.
de Bono B.
Della Gatta G.
di Bernardo D.
Down T.
Engstrom P.
Fagiolini M.
Faulkner G.
Fletcher C.F.
Fukushima T.
Furuno M.
Futaki S.
Gariboldi M.
Georgii-Hemming P.
Gingeras T.R.
Gojobori T.
Green R.E.
Gustincich S.
Harbers M.
Hayashi Y.
Hensch T.K.
Hirokawa N.
Hill D.
Huminiecki L.
Iacono M.
Ikeo K.
Iwama A.
Ishikawa T.
Jakt M.
Kanapin A.
Katoh M.
Kawasawa Y.
Kelso J.
Kitamura H.
Kitano H.
Kollias G.
Krishnan S.P.
Kruger A.
Kummerfeld S.K.
Kurochkin I.V.
Lareau L.F.
Lazarevic D.
Lipovich L.
Liu J.
Liuni S.
McWilliam S.
Madan Babu M.
Madera M.
Marchionni L.
Matsuda H.
Matsuzawa S.
Miki H.
Mignone F.
Miyake S.
Morris K.
Mottagui-Tabar S.
Mulder N.
Nakano N.
Nakauchi H.
Ng P.
Nilsson R.
Nishiguchi S.
Nishikawa S.
Nori F.
Ohara O.
Okazaki Y.
Orlando V.
Pang K.C.
Pavan W.J.
Pavesi G.
Pesole G.
Petrovsky N.
Piazza S.
Reed J.
Reid J.F.
Ring B.Z.
Ringwald M.
Rost B.
Ruan Y.
Salzberg S.L.
Sandelin A.
Schneider C.
Schoenbach C.
Sekiguchi K.
Semple C.A.
Seno S.
Sessa L.
Sheng Y.
Shibata Y.
Shimada H.
Shimada K.
Silva D.
Sinclair B.
Sperling S.
Stupka E.
Sugiura K.
Sultana R.
Takenaka Y.
Taki K.
Tammoja K.
Tan S.L.
Tang S.
Taylor M.S.
Tegner J.
Teichmann S.A.
Ueda H.R.
van Nimwegen E.
Verardo R.
Wei C.L.
Yagi K.
Yamanishi H.
Zabarovsky E.
Zhu S.
Zimmer A.
Hide W.
Bult C.
Grimmond S.M.
Teasdale R.D.
Liu E.T.
Brusic V.
Quackenbush J.
Wahlestedt C.
Mattick J.S.
Hume D.A.
Kai C.
Sasaki D.
Tomaru Y.
Fukuda S.
Kanamori-Katayama M.
Suzuki M.
Aoki J.
Arakawa T.
Iida J.
Imamura K.
Itoh M.
Kato T.
Kawaji H.
Kawagashira N.
Kawashima T.
Kojima M.
Kondo S.
Konno H.
Nakano K.
Ninomiya N.
Nishio T.
Okada M.
Plessy C.
Shibata K.
Shiraki T.
Suzuki S.
Tagami M.
Waki K.
Watahiki A.
Okamura-Oho Y.
Suzuki H.
Kawai J.
Hayashizaki Y.
doi:10.1126/science.1112014
2005
Science
309
1559-1563
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]
C57BL/6J
Forelimb
Hypothalamus
Lineage-specific biology revealed by a finished genome assembly of the mouse.
Church D.M.
Goodstadt L.
Hillier L.W.
Zody M.C.
Goldstein S.
She X.
Bult C.J.
Agarwala R.
Cherry J.L.
DiCuccio M.
Hlavina W.
Kapustin Y.
Meric P.
Maglott D.
Birtle Z.
Marques A.C.
Graves T.
Zhou S.
Teague B.
Potamousis K.
Churas C.
Place M.
Herschleb J.
Runnheim R.
Forrest D.
Amos-Landgraf J.
Schwartz D.C.
Cheng Z.
Lindblad-Toh K.
Eichler E.E.
Ponting C.P.
doi:10.1371/journal.pbio.1000112
2009
PLoS Biol.
7
E1000112
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
Mural R.J.
Adams M.D.
Myers E.W.
Smith H.O.
Venter J.C.
2005-07
EMBL/GenBank/DDBJ
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team
doi:10.1101/gr.2596504
2004
Genome Res.
14
2121-2127
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2)
Eye
Mammary cancer
Salivary gland
Large-scale phosphorylation analysis of mouse liver.
Villen J.
Beausoleil S.A.
Gerber S.A.
Gygi S.P.
doi:10.1073/pnas.0609836104
2007
Proc. Natl. Acad. Sci. U.S.A.
104
1488-1493
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-23 AND SER-25
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
Liver
A tissue-specific atlas of mouse protein phosphorylation and expression.
Huttlin E.L.
Jedrychowski M.P.
Elias J.E.
Goswami T.
Rad R.
Beausoleil S.A.
Villen J.
Haas W.
Sowa M.E.
Gygi S.P.
doi:10.1016/j.cell.2010.12.001
2010
Cell
143
1174-1189
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-23 AND SER-25
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
Brain
Kidney
Lung
Spleen
Testis
Different initiation.
40
1
1 site, 1 O-linked glycan (1 site)
192 antibodies from 25 providers
mouse
mouse
Ddx27
Eukaryota
21 hits in 81 CRISPR screens
mouse
Protein
Expressed in ectoplacental cone and 263 other cell types or tissues
baseline and differential
DEADc_DDX27
SF2_C_DEAD
P-loop containing nucleotide triphosphate hydrolases
DEAD/DEAH_box_helicase_dom
Helicase_ATP-bd
Helicase_C
P-loop_NTPase
RNA-helicase_DEAD-box_CS
RNA_helicase_DEAD_Q_motif
ATP-DEPENDENT RNA HELICASE RHLE-RELATED
DEAD-BOX ATP-DEPENDENT RNA HELICASE 28
DEAD
Helicase_C
DEXDc
HELICc
P-loop containing nucleoside triphosphate hydrolases
DEAD_ATP_HELICASE
HELICASE_ATP_BIND_1
HELICASE_CTER
Q_MOTIF
MM
Probable ATP-dependent RNA helicase DDX27
3.6.4.13
DEAD box protein 27
Ddx27
Probable ATP-dependent RNA helicase. Component of the nucleolar ribosomal RNA (rRNA) processing machinery that regulates 3' end formation of ribosomal 47S rRNA.
Associates with PeBoW complex, composed of BOP1, PES1 and WDR12. Interacts directly with BOP1 and PES1.
Associates with 60S and 90S pre-ribosomal particles.
The C-terminal domain regulates nucleolar localization.
Belongs to the DEAD box helicase family. DDX27/DRS1 subfamily.
Truncated N-terminus.
Probable ATP-dependent RNA helicase DDX27
85939
1
760
Helicase ATP-binding
215
389
Helicase C-terminal
419
569
Disordered
50
Disordered
80
149
Disordered
605
624
Disordered
679
Required for interaction with the PEBOW complex
55
57
Nuclear localization signal
157
166
Q motif
184
212
DEAD box
337
340
Basic and acidic residues
81
129
Acidic residues
130
144
Basic and acidic residues
689
722
Basic and acidic residues
729
743
228
235
Phosphoserine
23
Phosphoserine
25
Phosphoserine
48
Phosphoserine
133
Phosphoserine
In isoform 2.
E
292
In isoform 2.
293
K
341
2011-07-27
3
85939
b9937378b57e015f18c5df1f9cb45ff5
1
MLAELGFIRTIGENDEVPVEPESDSGDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEKEGMYDGSWALADVMSQLKKKRAATTLDEKIEKVRKRRKAEDKEAKSGKVEEKEGQADSDLKGQENPGEDEAGSKDEDSETDYSSEDEEILTKADTLKVKEKKKKKKGQAAGGFFEDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAEERSQFEILKAQMFAERLAKRNRRTKRARAMPEDEPTGPAKKQKQQQKSVFDEELTNTSKKALKQYRAGPSFEERKQSGLPRQRRGNFKSKSRYKRKK
2
MLAELGFIRTIGENDEVPVEPESDSGDEEEEGPIVLGRKQKALQKNRSADFNPDFVFTEKEGMYDGSWALADVMSQLKKKRAATTLDEKIEKVRKRRKAEDKEAKSGKVEEKEGQADSDLKGQENPGEDEAGSKDEDSETDYSSEDEEILTKADTLKVKEKKKKKKGQAAGGFFEDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGE
true
true
true
true
true
true
true
true
true