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Protein
Submitted name:

Retinoic acid receptor

Gene

rara

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi74 – 149Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotationImported
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Retinoic acid receptorImported
Gene namesi
Name:raraImported
Synonyms:RARaImported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-865415. rara.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ92019.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini74 – 149Nuclear receptor DNA-bindingInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG005606.
KOiK08527.

Family and domain databases

Gene3Di3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR003078. Retinoic_acid_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PRINTSiPR01292. RETNOICACIDR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q92019-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYENVDVSPT HYHMMDFYSH NRQCLWPEKR INPYGTPLGT QHWSSSNHSI
60 70 80 90 100
ETQSTSSEEI VPSPPSPPPL PRIYKPCFVC QDKSSGYHYG VSACEGCKGF
110 120 130 140 150
FRRSIQKNMV YTCHRDKNCI INKVTRNRCQ YCRLQKCFEV GMSKESVRND
160 170 180 190 200
RNKKKKEPPK VDVMESYVLS PETQDLIEKV RKAHKETFPA LCQLGKYTTN
210 220 230 240 250
FSSEERVSLD IDLWDKFSEL STKCIIKTVE FAKQLPGFTT LTIADQITLL
260 270 280 290 300
KSACLDILIL RICTRYTPDQ DTMTFSDGLT LNRTQMHNAG FGPLTDLVFA
310 320 330 340 350
FANQLLPLEM DDAETGLLSA ICLICGDRQD LEQPDKVDKL QEPLLEALKI
360 370 380 390 400
YVRNRRPKKP HMFPKMLMKI TDLRSISAKG AERVITLKME IPGSMPPLIQ
410 420 430 440
EMLENSEGLD TLGGGASSQT PVTPVAPGSC SPSLSPSSTH SSPSSHSP
Length:448
Mass (Da):50,456
Last modified:November 1, 1996 - v1
Checksum:i6CF94B31BC57054B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87365 mRNA. Translation: CAA60791.1.
PIRiA56558.
B56558.
RefSeqiNP_001083723.1. NM_001090254.1.
UniGeneiXl.158.

Genome annotation databases

GeneIDi399081.
KEGGixla:399081.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ92019_XENLA
AccessioniPrimary (citable) accession number: Q92019
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 7, 2017
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)