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Protein
Submitted name:

Retinoic acid receptor

Gene

rara

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ReceptorUniRule annotationImported

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Retinoic acid receptorImported
Gene namesi
Name:raraImported
Synonyms:RARaImported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-865415. rara.

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ92019.
SMRiQ92019. Positions 76-150, 171-405.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini74 – 14976Nuclear receptor DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation
Contains 1 Nuclear receptor DNA-binding domain.UniRule annotation
Contains nuclear receptor DNA-binding domain.SAAS annotation

Keywords - Domaini

Zinc-fingerUniRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG005606.
KOiK08527.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR003078. Retinoic_acid_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR01292. RETNOICACIDR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q92019-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYENVDVSPT HYHMMDFYSH NRQCLWPEKR INPYGTPLGT QHWSSSNHSI
60 70 80 90 100
ETQSTSSEEI VPSPPSPPPL PRIYKPCFVC QDKSSGYHYG VSACEGCKGF
110 120 130 140 150
FRRSIQKNMV YTCHRDKNCI INKVTRNRCQ YCRLQKCFEV GMSKESVRND
160 170 180 190 200
RNKKKKEPPK VDVMESYVLS PETQDLIEKV RKAHKETFPA LCQLGKYTTN
210 220 230 240 250
FSSEERVSLD IDLWDKFSEL STKCIIKTVE FAKQLPGFTT LTIADQITLL
260 270 280 290 300
KSACLDILIL RICTRYTPDQ DTMTFSDGLT LNRTQMHNAG FGPLTDLVFA
310 320 330 340 350
FANQLLPLEM DDAETGLLSA ICLICGDRQD LEQPDKVDKL QEPLLEALKI
360 370 380 390 400
YVRNRRPKKP HMFPKMLMKI TDLRSISAKG AERVITLKME IPGSMPPLIQ
410 420 430 440
EMLENSEGLD TLGGGASSQT PVTPVAPGSC SPSLSPSSTH SSPSSHSP
Length:448
Mass (Da):50,456
Last modified:November 1, 1996 - v1
Checksum:i6CF94B31BC57054B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87365 mRNA. Translation: CAA60791.1.
PIRiA56558.
B56558.
RefSeqiNP_001083723.1. NM_001090254.1.
UniGeneiXl.158.

Genome annotation databases

GeneIDi399081.
KEGGixla:399081.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X87365 mRNA. Translation: CAA60791.1.
PIRiA56558.
B56558.
RefSeqiNP_001083723.1. NM_001090254.1.
UniGeneiXl.158.

3D structure databases

ProteinModelPortaliQ92019.
SMRiQ92019. Positions 76-150, 171-405.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi399081.
KEGGixla:399081.

Organism-specific databases

CTDi5914.
XenbaseiXB-GENE-865415. rara.

Phylogenomic databases

HOVERGENiHBG005606.
KOiK08527.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR003078. Retinoic_acid_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR01292. RETNOICACIDR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ92019_XENLA
AccessioniPrimary (citable) accession number: Q92019
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.