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Q91ZR7

- S35A4_RAT

UniProt

Q91ZR7 - S35A4_RAT

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Protein
Probable UDP-sugar transporter protein SLC35A4
Gene
Slc35a4, CLRP
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sugar:proton symporter activity Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Probable UDP-sugar transporter protein SLC35A4
Alternative name(s):
Complex leucine repeat protein
Solute carrier family 35 member A4
Gene namesi
Name:Slc35a4
Synonyms:CLRP
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 18

Organism-specific databases

RGDi628792. Slc35a4.

Subcellular locationi

Membrane; Multi-pass membrane protein Reviewed prediction. Golgi apparatus
Note: Punctate and perinuclear distribution throughout the cytoplasm.

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei19 – 3921Helical; Reviewed prediction
Add
BLAST
Transmembranei53 – 7321Helical; Reviewed prediction
Add
BLAST
Transmembranei86 – 10621Helical; Reviewed prediction
Add
BLAST
Transmembranei143 – 16321Helical; Reviewed prediction
Add
BLAST
Transmembranei181 – 20121Helical; Reviewed prediction
Add
BLAST
Transmembranei215 – 23521Helical; Reviewed prediction
Add
BLAST
Transmembranei249 – 27123Helical; Reviewed prediction
Add
BLAST
Transmembranei280 – 30021Helical; Reviewed prediction
Add
BLAST
Transmembranei302 – 32221Helical; Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. Golgi membrane Source: InterPro
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 324324Probable UDP-sugar transporter protein SLC35A4
PRO_0000337752Add
BLAST

Proteomic databases

PRIDEiQ91ZR7.

Expressioni

Tissue specificityi

Expressed in the kidney, lung, testis, and prostate. Expressed in the brain by sets of neurons, such as the pyramidal cells of the cortex, the Purkinje cells of the cerebellum, and the motoneurons of the brainstem.1 Publication

Developmental stagei

Expressed at E15; Expression is maintained until postnatal day 10 and decreases in adults.1 Publication

Gene expression databases

GenevestigatoriQ91ZR7.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi144 – 1496Poly-Leu

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG302854.
GeneTreeiENSGT00550000074563.
HOGENOMiHOG000154235.
HOVERGENiHBG108445.
InParanoidiQ91ZR7.
KOiK15273.
OMAiSSTERGF.
OrthoDBiEOG7MSMQ1.
PhylomeDBiQ91ZR7.
TreeFamiTF315345.

Family and domain databases

InterProiIPR007271. Nuc_sug_transpt.
IPR021189. UDP/CMP-sugar_transptr.
[Graphical view]
PANTHERiPTHR10231. PTHR10231. 1 hit.
PfamiPF04142. Nuc_sug_transp. 1 hit.
[Graphical view]
PIRSFiPIRSF005799. UDP-gal_transpt. 1 hit.

Sequencei

Sequence statusi: Complete.

Q91ZR7-1 [UniParc]FASTAAdd to Basket

« Hide

MSVEDGGMPG LARPKQARWT LMLFLSTAMY GAHAPFLALC HVDGRVPFRP    50
SSAVLLTELT KLLLCAFSLL VGWQTWPQGT PPWRQAAPFA LSALLYGANN 100
NLVIYLQRYM DPSTYQVLSN LKIGSTALLY CLCLGHRLSA RQGLALLLLM 150
AAGACYASGG FQEPGNTLPG PRSAAGARPM PLHITPLGLL LLILYCLISG 200
LSSVYTELIM KRQRLPLALQ NLFLYTFGVI LNLGLYAGSG PGPGFLEGFS 250
GWAVLVVLNQ AVNGLLMSAV MKHGSSITRL FIVSCSLVVN AVLSAVLLQL 300
QLTATFFLAA LLIGLAVCLY YGSP 324
Length:324
Mass (Da):34,705
Last modified:May 20, 2008 - v2
Checksum:iF66D814CD7CB77C6
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti130 – 1301Y → C in AAK96221. 1 Publication
Sequence conflicti137 – 1371R → C in AAK96221. 1 Publication
Sequence conflicti260 – 2601Q → H in AAK96221. 1 Publication
Sequence conflicti275 – 2751S → I in AAK96221. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF406814 mRNA. Translation: AAK96221.1.
BC085695 mRNA. Translation: AAH85695.1.
BC086986 mRNA. Translation: AAH86986.1.
RefSeqiNP_671481.2. NM_147140.2.
XP_006254590.1. XM_006254528.1.
XP_006254591.1. XM_006254529.1.
UniGeneiRn.15468.

Genome annotation databases

EnsembliENSRNOT00000003878; ENSRNOP00000003878; ENSRNOG00000002908.
GeneIDi257647.
KEGGirno:257647.
UCSCiRGD:628792. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF406814 mRNA. Translation: AAK96221.1 .
BC085695 mRNA. Translation: AAH85695.1 .
BC086986 mRNA. Translation: AAH86986.1 .
RefSeqi NP_671481.2. NM_147140.2.
XP_006254590.1. XM_006254528.1.
XP_006254591.1. XM_006254529.1.
UniGenei Rn.15468.

3D structure databases

ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q91ZR7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000003878 ; ENSRNOP00000003878 ; ENSRNOG00000002908 .
GeneIDi 257647.
KEGGi rno:257647.
UCSCi RGD:628792. rat.

Organism-specific databases

CTDi 113829.
RGDi 628792. Slc35a4.

Phylogenomic databases

eggNOGi NOG302854.
GeneTreei ENSGT00550000074563.
HOGENOMi HOG000154235.
HOVERGENi HBG108445.
InParanoidi Q91ZR7.
KOi K15273.
OMAi SSTERGF.
OrthoDBi EOG7MSMQ1.
PhylomeDBi Q91ZR7.
TreeFami TF315345.

Miscellaneous databases

NextBioi 624187.
PROi Q91ZR7.

Gene expression databases

Genevestigatori Q91ZR7.

Family and domain databases

InterProi IPR007271. Nuc_sug_transpt.
IPR021189. UDP/CMP-sugar_transptr.
[Graphical view ]
PANTHERi PTHR10231. PTHR10231. 1 hit.
Pfami PF04142. Nuc_sug_transp. 1 hit.
[Graphical view ]
PIRSFi PIRSF005799. UDP-gal_transpt. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning of the cDNA and mRNA expression of CLRP, a complex leucine repeat protein of the Golgi apparatus expressed by specific neurons of the rat brain."
    Perez-Marquez J., Reguillo B., Paniagua R.
    J. Neurobiol. 52:166-173(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Heart.
  3. "The nucleotide-sugar transporter family: a phylogenetic approach."
    Martinez-Duncker I., Mollicone R., Codogno P., Oriol R.
    Biochimie 85:245-260(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiS35A4_RAT
AccessioniPrimary (citable) accession number: Q91ZR7
Secondary accession number(s): Q5RKL6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: May 20, 2008
Last modified: July 9, 2014
This is version 68 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

Classified as NST family 1 subfamily D in a phylogenic study. Family 1 seems to be the most recent in evolution.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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