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Q91YK2 (RRP1B_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosomal RNA processing protein 1 homolog B
Alternative name(s):
RRP1-like protein B
Gene names
Name:Rrp1b
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length724 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Nucleusnucleolus By similarity.

Post-translational modification

Citrullinated by PADI4.

Sequence similarities

Belongs to the RRP1 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 724724Ribosomal RNA processing protein 1 homolog B
PRO_0000340116

Amino acid modifications

Modified residue3361Phosphoserine By similarity
Modified residue3701Phosphoserine By similarity
Modified residue4321Phosphoserine By similarity
Modified residue4381Phosphoserine By similarity
Modified residue4941Phosphoserine By similarity
Modified residue6181N6-acetyllysine By similarity
Modified residue6681Phosphoserine By similarity
Modified residue6721Phosphoserine By similarity
Modified residue6781Citrulline
Modified residue6941Phosphothreonine By similarity
Modified residue6981Phosphoserine By similarity
Modified residue7011Phosphoserine By similarity

Experimental info

Sequence conflict2091V → A in AAH16569. Ref.2
Sequence conflict2291Q → E in AAH16569. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Q91YK2 [UniParc].

Last modified June 10, 2008. Version 2.
Checksum: 4DEFC78AADBA38F1

FASTA72480,582
        10         20         30         40         50         60 
MALAMQSSEF QFAQRLASSE KGVRDRAVRK LRQYLSARTQ SDTGSFSQEE LLKIWKGLFY 

        70         80         90        100        110        120 
CMWVQDEPLL QEELANIISQ LIHVVNSLEA QYLFIQTFWQ TMNREWQGID KLQLDKYYML 

       130        140        150        160        170        180 
IRLVLRQSFE VLKRNAWEES QITLFLDILM KEILSPESQS PNGVRTHLID VYLEELTTVG 

       190        200        210        220        230        240 
GAELLADQNL KLIDPFCRIA AKTKDHTLVQ TVARGVFEVI VDQSACVPQE SVEERKTKED 

       250        260        270        280        290        300 
GSGFPTKALA CRKAVSGKKA ALDECLRDGV IGSRERDICA ALKDSGSPLQ FDYKAVADRL 

       310        320        330        340        350        360 
LEIANSKSTP PFNRKRLCRL VRKFQDLCEG NGAPLSSAED NGQRRHKRKR KKLLESEKGD 

       370        380        390        400        410        420 
TVSPAAEEDS GGHIHKKKRK KRKRSHFQPD TQNLDAVAVP KVPDSESEPD TAQRQAPCGQ 

       430        440        450        460        470        480 
ACVTEPTAEA VSSIGENSSK PTPVMPIHNK RKRPRKKKLR AHKEICKSTT LPQEDMSKND 

       490        500        510        520        530        540 
AVSGHSQSSA AHISSSEGVQ AQKRKRKLGA LPDSSSDLPV QKSGTPTSPV EGKDGQTTLP 

       550        560        570        580        590        600 
RCKRSQKKTA SSTLDPCDPS SQKPAISKKK KKTMKLMSNG VLESNPGQIQ ALGSNRTLKK 

       610        620        630        640        650        660 
PLKTEDDFVK FDTRFLPKPL FFRKAKNSSA TRPQGPAGQL NKTPSSSKKV TFGLNRNMTA 

       670        680        690        700        710        720 
EFKKTDKSIL VSPTGLSRVA FNPEQRPLHG VLKTATSSPA STPLSPMRLP ATTPKRRPRA 


ADFF 

« Hide

References

« Hide 'large scale' references
[1]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N.
Tissue: Mammary tumor.
[3]"Citrullination regulates pluripotency and histone H1 binding to chromatin."
Christophorou M.A., Castelo-Branco G., Halley-Stott R.P., Oliveira C.S., Loos R., Radzisheuskaya A., Mowen K.A., Bertone P., Silva J.C., Zernicka-Goetz M., Nielsen M.L., Gurdon J.B., Kouzarides T.
Nature 507:104-108(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: CITRULLINATION AT ARG-678.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CT033797 Genomic DNA. Translation: CAQ11869.1.
BC016569 mRNA. Translation: AAH16569.1.
CCDSCCDS28613.1.
RefSeqNP_082520.2. NM_028244.2.
UniGeneMm.102761.

3D structure databases

ProteinModelPortalQ91YK2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid215383. 45 interactions.
IntActQ91YK2. 2 interactions.
MINTMINT-4121923.

PTM databases

PhosphoSiteQ91YK2.

Proteomic databases

MaxQBQ91YK2.
PaxDbQ91YK2.
PRIDEQ91YK2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000081339; ENSMUSP00000080085; ENSMUSG00000058392.
GeneID72462.
KEGGmmu:72462.
UCSCuc008bvt.2. mouse.

Organism-specific databases

CTD23076.
MGIMGI:1919712. Rrp1b.

Phylogenomic databases

eggNOGNOG299406.
GeneTreeENSGT00390000011821.
HOGENOMHOG000070179.
HOVERGENHBG098014.
InParanoidQ91YK2.
KOK14849.
OMAMTAEFKK.
OrthoDBEOG718KC8.
PhylomeDBQ91YK2.
TreeFamTF315294.

Gene expression databases

ArrayExpressQ91YK2.
BgeeQ91YK2.
GenevestigatorQ91YK2.

Family and domain databases

InterProIPR010301. Nop52.
[Graphical view]
PANTHERPTHR13026. PTHR13026. 1 hit.
PfamPF05997. Nop52. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSRRP1B. mouse.
NextBio336284.
PROQ91YK2.
SOURCESearch...

Entry information

Entry nameRRP1B_MOUSE
AccessionPrimary (citable) accession number: Q91YK2
Secondary accession number(s): B0V2W7
Entry history
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: June 10, 2008
Last modified: July 9, 2014
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot